.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00420_23H5VFLT4_s45)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/45861c64e1f1ff0133a5170a008580/.command.log
Size: 829 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (tih_rna_sample_00420_23H5VFLT4_s45)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/45861c64e1f1ff0133a5170a008580/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/bef9fcdaff14a0d6fbd59769c29812/tih_rna_sample_00420_23H5VFLT4_s45.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/45861c64e1f1ff0133a5170a008580/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/450c278d668d1168bf34a1a32731d8/tih_rna_sample_00420_23H5VFLT4_s45.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory