File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8d958689ea7d8d73f7f374ba3c1792/.command.log
Size
729 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (tih_rna_sample_00261_23H5VFLT4_s06)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/373f4282ac6f9e54a4be0b1f93f355/tih_rna_sample_00261_23H5VFLT4_s06.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8d958689ea7d8d73f7f374ba3c1792/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/8d958689ea7d8d73f7f374ba3c1792/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  tih_rna_sample_00261_23H5VFLT4_s06: vaf_p90=1.000000 -> CLEAN

Output saved to: tih_rna_sample_00261_23H5VFLT4_s06.predictions.csv
Summary: 0/1 samples flagged as contaminated