AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 90
Pass (FILTER=PASS): 8 (8.9%)
Fail (FILTER=FAIL): 82 (91.1%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 9
confidence_below_min(medium<high): 8
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 7
confidence_below_min(medium<high);aih_curated_blacklist: 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
total_reads_below_min(6.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1
total_reads_below_min(5.0<8.0): 1
Breakdown by confidence:
high: 8 pass, 4 fail (total: 12)
low: 0 pass, 54 fail (total: 54)
medium: 0 pass, 24 fail (total: 24)
Arriba filter: 90 rows -> 8 PASS; wrote V4_0001_RNA_0005_23H5VFLT4_s23.arriba.fusions.filtered.tsv and V4_0001_RNA_0005_23H5VFLT4_s23.arriba.fusions.filtered_pass_only.tsv
Summary written to: V4_0001_RNA_0005_23H5VFLT4_s23.arriba.fusions.filter_summary.txt