Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/7151ba8f0eb992de79379165a18080/fi_workdir/tih_rna_sample_00118_23H5VFLT4_s38.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/668eed657375f463cbbfe7c0a73223/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/668eed657375f463cbbfe7c0a73223/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 5260
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 5260
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:5260
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC005993.1--RGS6 ENSEMBL gene 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC005993.1--RGS6 ENSEMBL mRNA 16301 50680 . + . FI_gene_label "RGS6^ENSG00000182732.18" ; ID "AC005993.1--RGS6^ENST00000343854.10" ; Parent "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; exon_id "ENSE00003732696.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^RGS6^ENSG00000182732.18" ; gene_name RGS6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171340.6" ; hgnc_id "HGNC:10002" ; level 3 ; orig_coord_info "chr14,72352116,72352194,+" ; protein_id "ENSP00000341199.7" ; tag basic ; transcript_id "AC005993.1--RGS6^ENST00000343854.10" ; transcript_name "RGS6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FLCN--ZNF624 HAVANA gene 1021 20328 . + . FI_gene_label "FLCN^ENSG00000154803.13" ; ID "FLCN--ZNF624^FLCN^ENSG00000154803.13" ; ccdsid "CCDS32579.1" ; exon_id "ENSE00003691829.1" ; exon_number 4 ; gene_id "FLCN--ZNF624^FLCN^ENSG00000154803.13" ; gene_name FLCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000059275.6" ; havana_transcript "OTTHUMT00000131577.2" ; hgnc_id "HGNC:27310" ; level 2 ; orig_coord_info "chr17,17227889,17228137,-" ; protein_id "ENSP00000285071.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FLCN--ZNF624^ENST00000285071.9" ; transcript_name "FLCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
FLCN--ZNF624 HAVANA mRNA 1021 20328 . + . FI_gene_label "FLCN^ENSG00000154803.13" ; ID "FLCN--ZNF624^ENST00000285071.9" ; Parent "FLCN--ZNF624^FLCN^ENSG00000154803.13" ; ccdsid "CCDS32579.1" ; exon_id "ENSE00003691829.1" ; exon_number 4 ; gene_id "FLCN--ZNF624^FLCN^ENSG00000154803.13" ; gene_name FLCN ; gene_type protein_coding ; havana_gene "OTTHUMG00000059275.6" ; havana_transcript "OTTHUMT00000131577.2" ; hgnc_id "HGNC:27310" ; level 2 ; orig_coord_info "chr17,17227889,17228137,-" ; protein_id "ENSP00000285071.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FLCN--ZNF624^ENST00000285071.9" ; transcript_name "FLCN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FLCN--ZNF624 HAVANA gene 23335 34093 . + . FI_gene_label "ZNF624^ENSG00000197566.10" ; ID "FLCN--ZNF624^ZNF624^ENSG00000197566.10" ; ccdsid "CCDS11180.1" ; exon_id "ENSE00001429439.1" ; exon_number 2 ; gene_id "FLCN--ZNF624^ZNF624^ENSG00000197566.10" ; gene_name ZNF624 ; gene_type protein_coding ; havana_gene "OTTHUMG00000058996.6" ; havana_transcript "OTTHUMT00000130512.4" ; hgnc_id "HGNC:29254" ; level 2 ; orig_coord_info "chr17,16649658,16649744,-" ; protein_id "ENSP00000310472.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FLCN--ZNF624^ENST00000311331.12" ; transcript_name "ZNF624-201" ; transcript_support_level 2 ; transcript_type protein_coding
FLCN--ZNF624 HAVANA mRNA 23335 34093 . + . FI_gene_label "ZNF624^ENSG00000197566.10" ; ID "FLCN--ZNF624^ENST00000311331.12" ; Parent "FLCN--ZNF624^ZNF624^ENSG00000197566.10" ; ccdsid "CCDS11180.1" ; exon_id "ENSE00001429439.1" ; exon_number 2 ; gene_id "FLCN--ZNF624^ZNF624^ENSG00000197566.10" ; gene_name ZNF624 ; gene_type protein_coding ; havana_gene "OTTHUMG00000058996.6" ; havana_transcript "OTTHUMT00000130512.4" ; hgnc_id "HGNC:29254" ; level 2 ; orig_coord_info "chr17,16649658,16649744,-" ; protein_id "ENSP00000310472.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FLCN--ZNF624^ENST00000311331.12" ; transcript_name "ZNF624-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FOXJ3--HIVEP3 HAVANA gene 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--HIVEP3^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--HIVEP3^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--HIVEP3^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXJ3--HIVEP3 HAVANA mRNA 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--HIVEP3^ENST00000361346.6" ; Parent "FOXJ3--HIVEP3^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--HIVEP3^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--HIVEP3^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXJ3--HIVEP3 HAVANA gene 25499 53328 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "FOXJ3--HIVEP3^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "FOXJ3--HIVEP3^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "FOXJ3--HIVEP3^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXJ3--HIVEP3 HAVANA mRNA 25499 53328 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "FOXJ3--HIVEP3^ENST00000372583.6" ; Parent "FOXJ3--HIVEP3^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "FOXJ3--HIVEP3^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "FOXJ3--HIVEP3^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGSF8--KCNJ10 HAVANA gene 1325 6525 . + . FI_gene_label "IGSF8^ENSG00000162729.14" ; ID "IGSF8--KCNJ10^IGSF8^ENSG00000162729.14" ; ccdsid "CCDS1195.1" ; exon_id "ENSE00003850938.1" ; exon_number 1 ; gene_id "IGSF8--KCNJ10^IGSF8^ENSG00000162729.14" ; gene_name IGSF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024075.6" ; havana_transcript "OTTHUMT00000060634.3" ; hgnc_id "HGNC:17813" ; level 2 ; orig_coord_info "chr1,160098409,160098472,-" ; protein_id "ENSP00000316664.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGSF8--KCNJ10^ENST00000314485.12" ; transcript_name "IGSF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGSF8--KCNJ10 HAVANA mRNA 1325 6525 . + . FI_gene_label "IGSF8^ENSG00000162729.14" ; ID "IGSF8--KCNJ10^ENST00000314485.12" ; Parent "IGSF8--KCNJ10^IGSF8^ENSG00000162729.14" ; ccdsid "CCDS1195.1" ; exon_id "ENSE00003850938.1" ; exon_number 1 ; gene_id "IGSF8--KCNJ10^IGSF8^ENSG00000162729.14" ; gene_name IGSF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024075.6" ; havana_transcript "OTTHUMT00000060634.3" ; hgnc_id "HGNC:17813" ; level 2 ; orig_coord_info "chr1,160098409,160098472,-" ; protein_id "ENSP00000316664.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGSF8--KCNJ10^ENST00000314485.12" ; transcript_name "IGSF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGSF8--KCNJ10 HAVANA gene 12899 19135 . + . FI_gene_label "KCNJ10^ENSG00000177807.10" ; ID "IGSF8--KCNJ10^KCNJ10^ENSG00000177807.10" ; exon_id "ENSE00002068106.2" ; exon_number 1 ; gene_id "IGSF8--KCNJ10^KCNJ10^ENSG00000177807.10" ; gene_name KCNJ10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024073.5" ; havana_transcript "OTTHUMT00000492522.1" ; hgnc_id "HGNC:6256" ; level 1 ; orig_coord_info "chr1,160041834,160042504,-" ; protein_id "ENSP00000491416.1" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only exp_conf ; transcript_id "IGSF8--KCNJ10^ENST00000509700.2" ; transcript_name "KCNJ10-201" ; transcript_support_level 5 ; transcript_type protein_coding
IGSF8--KCNJ10 HAVANA mRNA 12899 19135 . + . FI_gene_label "KCNJ10^ENSG00000177807.10" ; ID "IGSF8--KCNJ10^ENST00000509700.2" ; Parent "IGSF8--KCNJ10^KCNJ10^ENSG00000177807.10" ; exon_id "ENSE00002068106.2" ; exon_number 1 ; gene_id "IGSF8--KCNJ10^KCNJ10^ENSG00000177807.10" ; gene_name KCNJ10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024073.5" ; havana_transcript "OTTHUMT00000492522.1" ; hgnc_id "HGNC:6256" ; level 1 ; orig_coord_info "chr1,160041834,160042504,-" ; protein_id "ENSP00000491416.1" ; tag mRNA_start_NF cds_start_NF RNA_Seq_supported_only exp_conf ; transcript_id "IGSF8--KCNJ10^ENST00000509700.2" ; transcript_name "KCNJ10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MTA3--PLEKHH2 HAVANA gene 35576 72792 . + . FI_gene_label "PLEKHH2^ENSG00000152527.14" ; ID "MTA3--PLEKHH2^PLEKHH2^ENSG00000152527.14" ; ccdsid "CCDS1812.1" ; exon_id "ENSE00003615232.1" ; exon_number 2 ; gene_id "MTA3--PLEKHH2^PLEKHH2^ENSG00000152527.14" ; gene_name PLEKHH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128657.8" ; havana_transcript "OTTHUMT00000250537.2" ; hgnc_id "HGNC:30506" ; level 2 ; orig_coord_info "chr2,43644674,43644796,+" ; protein_id "ENSP00000282406.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTA3--PLEKHH2^ENST00000282406.9" ; transcript_name "PLEKHH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MTA3--PLEKHH2 HAVANA mRNA 35576 72792 . + . FI_gene_label "PLEKHH2^ENSG00000152527.14" ; ID "MTA3--PLEKHH2^ENST00000282406.9" ; Parent "MTA3--PLEKHH2^PLEKHH2^ENSG00000152527.14" ; ccdsid "CCDS1812.1" ; exon_id "ENSE00003615232.1" ; exon_number 2 ; gene_id "MTA3--PLEKHH2^PLEKHH2^ENSG00000152527.14" ; gene_name PLEKHH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128657.8" ; havana_transcript "OTTHUMT00000250537.2" ; hgnc_id "HGNC:30506" ; level 2 ; orig_coord_info "chr2,43644674,43644796,+" ; protein_id "ENSP00000282406.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTA3--PLEKHH2^ENST00000282406.9" ; transcript_name "PLEKHH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MTA3--PLEKHH2 HAVANA gene 3274 32574 . + . FI_gene_label "MTA3^ENSG00000057935.14" ; ID "MTA3--PLEKHH2^MTA3^ENSG00000057935.14" ; ccdsid "CCDS82441.1" ; exon_id "ENSE00001559523.2" ; exon_number 1 ; gene_id "MTA3--PLEKHH2^MTA3^ENSG00000057935.14" ; gene_name MTA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150452.5" ; havana_transcript "OTTHUMT00000318159.2" ; hgnc_id "HGNC:23784" ; level 2 ; orig_coord_info "chr2,42568746,42568773,+" ; protein_id "ENSP00000385823.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTA3--PLEKHH2^ENST00000405094.2" ; transcript_name "MTA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
MTA3--PLEKHH2 HAVANA mRNA 3274 32574 . + . FI_gene_label "MTA3^ENSG00000057935.14" ; ID "MTA3--PLEKHH2^ENST00000405094.2" ; Parent "MTA3--PLEKHH2^MTA3^ENSG00000057935.14" ; ccdsid "CCDS82441.1" ; exon_id "ENSE00001559523.2" ; exon_number 1 ; gene_id "MTA3--PLEKHH2^MTA3^ENSG00000057935.14" ; gene_name MTA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150452.5" ; havana_transcript "OTTHUMT00000318159.2" ; hgnc_id "HGNC:23784" ; level 2 ; orig_coord_info "chr2,42568746,42568773,+" ; protein_id "ENSP00000385823.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MTA3--PLEKHH2^ENST00000405094.2" ; transcript_name "MTA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PPP4R3A--AL133373.1 HAVANA gene 1901 16329 . + . FI_gene_label "PPP4R3A^ENSG00000100796.18" ; ID "PPP4R3A--AL133373.1^PPP4R3A^ENSG00000100796.18" ; exon_id "ENSE00002520468.1" ; exon_number 1 ; gene_id "PPP4R3A--AL133373.1^PPP4R3A^ENSG00000100796.18" ; gene_name PPP4R3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171102.2" ; havana_transcript "OTTHUMT00000411670.1" ; hgnc_id "HGNC:20219" ; level 2 ; orig_coord_info "chr14,91509506,91509654,-" ; protein_id "ENSP00000450473.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PPP4R3A--AL133373.1^ENST00000554308.5" ; transcript_name "PPP4R3A-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
PPP4R3A--AL133373.1 HAVANA mRNA 1901 16329 . + . FI_gene_label "PPP4R3A^ENSG00000100796.18" ; ID "PPP4R3A--AL133373.1^ENST00000554308.5" ; Parent "PPP4R3A--AL133373.1^PPP4R3A^ENSG00000100796.18" ; exon_id "ENSE00002520468.1" ; exon_number 1 ; gene_id "PPP4R3A--AL133373.1^PPP4R3A^ENSG00000100796.18" ; gene_name PPP4R3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171102.2" ; havana_transcript "OTTHUMT00000411670.1" ; hgnc_id "HGNC:20219" ; level 2 ; orig_coord_info "chr14,91509506,91509654,-" ; protein_id "ENSP00000450473.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "PPP4R3A--AL133373.1^ENST00000554308.5" ; transcript_name "PPP4R3A-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PTPN20--BMS1P7 ENSEMBL gene 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN20--BMS1P7 ENSEMBL mRNA 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^ENST00000374218.6" ; Parent "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAP1GDS1--AC019077.1 HAVANA gene 1048 21158 . + . FI_gene_label "RAP1GDS1^ENSG00000138698.15" ; ID "RAP1GDS1--AC019077.1^RAP1GDS1^ENSG00000138698.15" ; ccdsid "CCDS47108.1" ; exon_id "ENSE00002071990.1" ; exon_number 1 ; gene_id "RAP1GDS1--AC019077.1^RAP1GDS1^ENSG00000138698.15" ; gene_name RAP1GDS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160987.12" ; havana_transcript "OTTHUMT00000363276.2" ; hgnc_id "HGNC:9859" ; level 2 ; orig_coord_info "chr4,98261566,98261569,+" ; protein_id "ENSP00000264572.7" ; tag basic CCDS ; transcript_id "RAP1GDS1--AC019077.1^ENST00000264572.11" ; transcript_name "RAP1GDS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
RAP1GDS1--AC019077.1 HAVANA mRNA 1048 21158 . + . FI_gene_label "RAP1GDS1^ENSG00000138698.15" ; ID "RAP1GDS1--AC019077.1^ENST00000264572.11" ; Parent "RAP1GDS1--AC019077.1^RAP1GDS1^ENSG00000138698.15" ; ccdsid "CCDS47108.1" ; exon_id "ENSE00002071990.1" ; exon_number 1 ; gene_id "RAP1GDS1--AC019077.1^RAP1GDS1^ENSG00000138698.15" ; gene_name RAP1GDS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160987.12" ; havana_transcript "OTTHUMT00000363276.2" ; hgnc_id "HGNC:9859" ; level 2 ; orig_coord_info "chr4,98261566,98261569,+" ; protein_id "ENSP00000264572.7" ; tag basic CCDS ; transcript_id "RAP1GDS1--AC019077.1^ENST00000264572.11" ; transcript_name "RAP1GDS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAP1GDS1--STPG2 HAVANA gene 1048 21158 . + . FI_gene_label "RAP1GDS1^ENSG00000138698.15" ; ID "RAP1GDS1--STPG2^RAP1GDS1^ENSG00000138698.15" ; ccdsid "CCDS47108.1" ; exon_id "ENSE00002071990.1" ; exon_number 1 ; gene_id "RAP1GDS1--STPG2^RAP1GDS1^ENSG00000138698.15" ; gene_name RAP1GDS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160987.12" ; havana_transcript "OTTHUMT00000363276.2" ; hgnc_id "HGNC:9859" ; level 2 ; orig_coord_info "chr4,98261566,98261569,+" ; protein_id "ENSP00000264572.7" ; tag basic CCDS ; transcript_id "RAP1GDS1--STPG2^ENST00000264572.11" ; transcript_name "RAP1GDS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
RAP1GDS1--STPG2 HAVANA mRNA 1048 21158 . + . FI_gene_label "RAP1GDS1^ENSG00000138698.15" ; ID "RAP1GDS1--STPG2^ENST00000264572.11" ; Parent "RAP1GDS1--STPG2^RAP1GDS1^ENSG00000138698.15" ; ccdsid "CCDS47108.1" ; exon_id "ENSE00002071990.1" ; exon_number 1 ; gene_id "RAP1GDS1--STPG2^RAP1GDS1^ENSG00000138698.15" ; gene_name RAP1GDS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160987.12" ; havana_transcript "OTTHUMT00000363276.2" ; hgnc_id "HGNC:9859" ; level 2 ; orig_coord_info "chr4,98261566,98261569,+" ; protein_id "ENSP00000264572.7" ; tag basic CCDS ; transcript_id "RAP1GDS1--STPG2^ENST00000264572.11" ; transcript_name "RAP1GDS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAP1GDS1--STPG2 HAVANA gene 25900 38943 . + . FI_gene_label "STPG2^ENSG00000163116.10" ; ID "RAP1GDS1--STPG2^STPG2^ENSG00000163116.10" ; ccdsid "CCDS3645.1" ; exon_id "ENSE00001071788.4" ; exon_number 1 ; gene_id "RAP1GDS1--STPG2^STPG2^ENSG00000163116.10" ; gene_name STPG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131009.4" ; havana_transcript "OTTHUMT00000253642.2" ; hgnc_id "HGNC:28712" ; level 2 ; orig_coord_info "chr4,98143042,98143150,-" ; protein_id "ENSP00000295268.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1GDS1--STPG2^ENST00000295268.4" ; transcript_name "STPG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAP1GDS1--STPG2 HAVANA mRNA 25900 38943 . + . FI_gene_label "STPG2^ENSG00000163116.10" ; ID "RAP1GDS1--STPG2^ENST00000295268.4" ; Parent "RAP1GDS1--STPG2^STPG2^ENSG00000163116.10" ; ccdsid "CCDS3645.1" ; exon_id "ENSE00001071788.4" ; exon_number 1 ; gene_id "RAP1GDS1--STPG2^STPG2^ENSG00000163116.10" ; gene_name STPG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131009.4" ; havana_transcript "OTTHUMT00000253642.2" ; hgnc_id "HGNC:28712" ; level 2 ; orig_coord_info "chr4,98143042,98143150,-" ; protein_id "ENSP00000295268.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1GDS1--STPG2^ENST00000295268.4" ; transcript_name "STPG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLCO1B3--SLCO1B7 ENSEMBL gene 3179 19485 . + . FI_gene_label "SLCO1B3^ENSG00000111700.13" ; ID "SLCO1B3--SLCO1B7^SLCO1B3^ENSG00000111700.13" ; ccdsid "CCDS8684.1" ; exon_id "ENSE00003727652.1" ; exon_number 1 ; gene_id "SLCO1B3--SLCO1B7^SLCO1B3^ENSG00000111700.13" ; gene_name SLCO1B3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169011.5" ; hgnc_id "HGNC:10961" ; level 3 ; orig_coord_info "chr12,20815739,20815822,+" ; protein_id "ENSP00000261196.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SLCO1B3--SLCO1B7^ENST00000261196.6" ; transcript_name "SLCO1B3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLCO1B3--SLCO1B7 ENSEMBL mRNA 3179 19485 . + . FI_gene_label "SLCO1B3^ENSG00000111700.13" ; ID "SLCO1B3--SLCO1B7^ENST00000261196.6" ; Parent "SLCO1B3--SLCO1B7^SLCO1B3^ENSG00000111700.13" ; ccdsid "CCDS8684.1" ; exon_id "ENSE00003727652.1" ; exon_number 1 ; gene_id "SLCO1B3--SLCO1B7^SLCO1B3^ENSG00000111700.13" ; gene_name SLCO1B3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169011.5" ; hgnc_id "HGNC:10961" ; level 3 ; orig_coord_info "chr12,20815739,20815822,+" ; protein_id "ENSP00000261196.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SLCO1B3--SLCO1B7^ENST00000261196.6" ; transcript_name "SLCO1B3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPATA13--AL159978.1 ENSEMBL gene 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--AL159978.1^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--AL159978.1^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--AL159978.1^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
SPATA13--AL159978.1 ENSEMBL mRNA 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--AL159978.1^ENST00000343003.10" ; Parent "SPATA13--AL159978.1^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--AL159978.1^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--AL159978.1^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SPATA13--FGFR1OP2P1 ENSEMBL gene 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
SPATA13--FGFR1OP2P1 ENSEMBL mRNA 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--FGFR1OP2P1^ENST00000343003.10" ; Parent "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SPATA13--GPR12 ENSEMBL gene 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--GPR12^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--GPR12^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--GPR12^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
SPATA13--GPR12 ENSEMBL mRNA 13601 30825 . + . FI_gene_label "SPATA13^ENSG00000182957.16" ; ID "SPATA13--GPR12^ENST00000343003.10" ; Parent "SPATA13--GPR12^SPATA13^ENSG00000182957.16" ; ccdsid "CCDS66518.1" ; exon_id "ENSE00001602241.1" ; exon_number 2 ; gene_id "SPATA13--GPR12^SPATA13^ENSG00000182957.16" ; gene_name SPATA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016578.14" ; hgnc_id "HGNC:23222" ; level 3 ; orig_coord_info "chr13,24278701,24278821,+" ; protein_id "ENSP00000343631.6" ; tag basic CCDS ; transcript_id "SPATA13--GPR12^ENST00000343003.10" ; transcript_name "SPATA13-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SPATA13--GPR12 HAVANA gene 34322 36302 . + . FI_gene_label "GPR12^ENSG00000132975.8" ; ID "SPATA13--GPR12^GPR12^ENSG00000132975.8" ; ccdsid "CCDS9319.1" ; exon_id "ENSE00001488609.2" ; exon_number 1 ; gene_id "SPATA13--GPR12^GPR12^ENSG00000132975.8" ; gene_name GPR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016620.4" ; havana_transcript "OTTHUMT00000044257.2" ; hgnc_id "HGNC:4466" ; level 2 ; orig_coord_info "chr13,26758826,26759827,-" ; protein_id "ENSP00000370844.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SPATA13--GPR12^ENST00000381436.2" ; transcript_name "GPR12-201" ; transcript_support_level NA ; transcript_type protein_coding
SPATA13--GPR12 HAVANA mRNA 34322 36302 . + . FI_gene_label "GPR12^ENSG00000132975.8" ; ID "SPATA13--GPR12^ENST00000381436.2" ; Parent "SPATA13--GPR12^GPR12^ENSG00000132975.8" ; ccdsid "CCDS9319.1" ; exon_id "ENSE00001488609.2" ; exon_number 1 ; gene_id "SPATA13--GPR12^GPR12^ENSG00000132975.8" ; gene_name GPR12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016620.4" ; havana_transcript "OTTHUMT00000044257.2" ; hgnc_id "HGNC:4466" ; level 2 ; orig_coord_info "chr13,26758826,26759827,-" ; protein_id "ENSP00000370844.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SPATA13--GPR12^ENST00000381436.2" ; transcript_name "GPR12-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TM9SF2--CLYBL HAVANA gene 31308 41937 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "TM9SF2--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "TM9SF2--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TM9SF2--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
TM9SF2--CLYBL HAVANA mRNA 31308 41937 . + . FI_gene_label "CLYBL^ENSG00000125246.15" ; ID "TM9SF2--CLYBL^ENST00000339105.8" ; Parent "TM9SF2--CLYBL^CLYBL^ENSG00000125246.15" ; ccdsid "CCDS32002.1" ; exon_id "ENSE00001869096.1" ; exon_number 1 ; gene_id "TM9SF2--CLYBL^CLYBL^ENSG00000125246.15" ; gene_name CLYBL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017278.3" ; havana_transcript "OTTHUMT00000045613.1" ; hgnc_id "HGNC:18355" ; level 2 ; orig_coord_info "chr13,99606696,99606757,+" ; protein_id "ENSP00000342991.4" ; tag basic appris_principal_1 CCDS ; transcript_id "TM9SF2--CLYBL^ENST00000339105.8" ; transcript_name "CLYBL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TM9SF2--CLYBL HAVANA gene 7284 28280 . + . FI_gene_label "TM9SF2^ENSG00000125304.10" ; ID "TM9SF2--CLYBL^TM9SF2^ENSG00000125304.10" ; ccdsid "CCDS9493.1" ; exon_id "ENSE00001470453.3" ; exon_number 1 ; gene_id "TM9SF2--CLYBL^TM9SF2^ENSG00000125304.10" ; gene_name TM9SF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017272.5" ; havana_transcript "OTTHUMT00000045602.5" ; hgnc_id "HGNC:11865" ; level 2 ; orig_coord_info "chr13,99501607,99501777,+" ; protein_id "ENSP00000365567.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TM9SF2--CLYBL^ENST00000376387.5" ; transcript_name "TM9SF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TM9SF2--CLYBL HAVANA mRNA 7284 28280 . + . FI_gene_label "TM9SF2^ENSG00000125304.10" ; ID "TM9SF2--CLYBL^ENST00000376387.5" ; Parent "TM9SF2--CLYBL^TM9SF2^ENSG00000125304.10" ; ccdsid "CCDS9493.1" ; exon_id "ENSE00001470453.3" ; exon_number 1 ; gene_id "TM9SF2--CLYBL^TM9SF2^ENSG00000125304.10" ; gene_name TM9SF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017272.5" ; havana_transcript "OTTHUMT00000045602.5" ; hgnc_id "HGNC:11865" ; level 2 ; orig_coord_info "chr13,99501607,99501777,+" ; protein_id "ENSP00000365567.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TM9SF2--CLYBL^ENST00000376387.5" ; transcript_name "TM9SF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UBAC2--TM9SF2 HAVANA gene 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--TM9SF2^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--TM9SF2^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--TM9SF2^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
UBAC2--TM9SF2 HAVANA mRNA 1001 16945 . + . FI_gene_label "UBAC2^ENSG00000134882.16" ; ID "UBAC2--TM9SF2^ENST00000355700.9" ; Parent "UBAC2--TM9SF2^UBAC2^ENSG00000134882.16" ; exon_id "ENSE00001411015.2" ; exon_number 1 ; gene_id "UBAC2--TM9SF2^UBAC2^ENSG00000134882.16" ; gene_name UBAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017267.5" ; havana_transcript "OTTHUMT00000045594.2" ; hgnc_id "HGNC:20486" ; level 2 ; orig_coord_info "chr13,99200909,99200939,+" ; protein_id "ENSP00000347928.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "UBAC2--TM9SF2^ENST00000355700.9" ; transcript_name "UBAC2-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
UBAC2--TM9SF2 HAVANA gene 27418 48414 . + . FI_gene_label "TM9SF2^ENSG00000125304.10" ; ID "UBAC2--TM9SF2^TM9SF2^ENSG00000125304.10" ; ccdsid "CCDS9493.1" ; exon_id "ENSE00001470453.3" ; exon_number 1 ; gene_id "UBAC2--TM9SF2^TM9SF2^ENSG00000125304.10" ; gene_name TM9SF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017272.5" ; havana_transcript "OTTHUMT00000045602.5" ; hgnc_id "HGNC:11865" ; level 2 ; orig_coord_info "chr13,99501607,99501777,+" ; protein_id "ENSP00000365567.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBAC2--TM9SF2^ENST00000376387.5" ; transcript_name "TM9SF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
UBAC2--TM9SF2 HAVANA mRNA 27418 48414 . + . FI_gene_label "TM9SF2^ENSG00000125304.10" ; ID "UBAC2--TM9SF2^ENST00000376387.5" ; Parent "UBAC2--TM9SF2^TM9SF2^ENSG00000125304.10" ; ccdsid "CCDS9493.1" ; exon_id "ENSE00001470453.3" ; exon_number 1 ; gene_id "UBAC2--TM9SF2^TM9SF2^ENSG00000125304.10" ; gene_name TM9SF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017272.5" ; havana_transcript "OTTHUMT00000045602.5" ; hgnc_id "HGNC:11865" ; level 2 ; orig_coord_info "chr13,99501607,99501777,+" ; protein_id "ENSP00000365567.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBAC2--TM9SF2^ENST00000376387.5" ; transcript_name "TM9SF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS26B--GDF10 HAVANA gene 1001 11700 . + . FI_gene_label "VPS26B^ENSG00000151502.11" ; ID "VPS26B--GDF10^VPS26B^ENSG00000151502.11" ; ccdsid "CCDS8495.1" ; exon_id "ENSE00001194641.6" ; exon_number 1 ; gene_id "VPS26B--GDF10^VPS26B^ENSG00000151502.11" ; gene_name VPS26B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167175.5" ; havana_transcript "OTTHUMT00000393591.2" ; hgnc_id "HGNC:28119" ; level 2 ; orig_coord_info "chr11,134225123,134225345,+" ; protein_id "ENSP00000281187.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--GDF10^ENST00000281187.10" ; transcript_name "VPS26B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS26B--GDF10 HAVANA mRNA 1001 11700 . + . FI_gene_label "VPS26B^ENSG00000151502.11" ; ID "VPS26B--GDF10^ENST00000281187.10" ; Parent "VPS26B--GDF10^VPS26B^ENSG00000151502.11" ; ccdsid "CCDS8495.1" ; exon_id "ENSE00001194641.6" ; exon_number 1 ; gene_id "VPS26B--GDF10^VPS26B^ENSG00000151502.11" ; gene_name VPS26B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167175.5" ; havana_transcript "OTTHUMT00000393591.2" ; hgnc_id "HGNC:28119" ; level 2 ; orig_coord_info "chr11,134225123,134225345,+" ; protein_id "ENSP00000281187.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--GDF10^ENST00000281187.10" ; transcript_name "VPS26B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS26B--GDF10 HAVANA gene 14701 19377 . + . FI_gene_label "GDF10^ENSG00000266524.3" ; ID "VPS26B--GDF10^GDF10^ENSG00000266524.3" ; ccdsid "CCDS73117.1" ; exon_id "ENSE00002721632.2" ; exon_number 1 ; gene_id "VPS26B--GDF10^GDF10^ENSG00000266524.3" ; gene_name GDF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188319.2" ; havana_transcript "OTTHUMT00000476888.2" ; hgnc_id "HGNC:4215" ; level 2 ; orig_coord_info "chr10,47300652,47300970,+" ; protein_id "ENSP00000464145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--GDF10^ENST00000580279.2" ; transcript_name "GDF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS26B--GDF10 HAVANA mRNA 14701 19377 . + . FI_gene_label "GDF10^ENSG00000266524.3" ; ID "VPS26B--GDF10^ENST00000580279.2" ; Parent "VPS26B--GDF10^GDF10^ENSG00000266524.3" ; ccdsid "CCDS73117.1" ; exon_id "ENSE00002721632.2" ; exon_number 1 ; gene_id "VPS26B--GDF10^GDF10^ENSG00000266524.3" ; gene_name GDF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188319.2" ; havana_transcript "OTTHUMT00000476888.2" ; hgnc_id "HGNC:4215" ; level 2 ; orig_coord_info "chr10,47300652,47300970,+" ; protein_id "ENSP00000464145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--GDF10^ENST00000580279.2" ; transcript_name "GDF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS26B--PTPN20 HAVANA gene 1001 11700 . + . FI_gene_label "VPS26B^ENSG00000151502.11" ; ID "VPS26B--PTPN20^VPS26B^ENSG00000151502.11" ; ccdsid "CCDS8495.1" ; exon_id "ENSE00001194641.6" ; exon_number 1 ; gene_id "VPS26B--PTPN20^VPS26B^ENSG00000151502.11" ; gene_name VPS26B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167175.5" ; havana_transcript "OTTHUMT00000393591.2" ; hgnc_id "HGNC:28119" ; level 2 ; orig_coord_info "chr11,134225123,134225345,+" ; protein_id "ENSP00000281187.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--PTPN20^ENST00000281187.10" ; transcript_name "VPS26B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS26B--PTPN20 HAVANA mRNA 1001 11700 . + . FI_gene_label "VPS26B^ENSG00000151502.11" ; ID "VPS26B--PTPN20^ENST00000281187.10" ; Parent "VPS26B--PTPN20^VPS26B^ENSG00000151502.11" ; ccdsid "CCDS8495.1" ; exon_id "ENSE00001194641.6" ; exon_number 1 ; gene_id "VPS26B--PTPN20^VPS26B^ENSG00000151502.11" ; gene_name VPS26B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167175.5" ; havana_transcript "OTTHUMT00000393591.2" ; hgnc_id "HGNC:28119" ; level 2 ; orig_coord_info "chr11,134225123,134225345,+" ; protein_id "ENSP00000281187.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS26B--PTPN20^ENST00000281187.10" ; transcript_name "VPS26B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS26B--PTPN20 ENSEMBL gene 14743 34016 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "VPS26B--PTPN20^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "VPS26B--PTPN20^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "VPS26B--PTPN20^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
VPS26B--PTPN20 ENSEMBL mRNA 14743 34016 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "VPS26B--PTPN20^ENST00000374218.6" ; Parent "VPS26B--PTPN20^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "VPS26B--PTPN20^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "VPS26B--PTPN20^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ENST00000221735.12" ; Parent "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ENST00000343280.8" ; Parent "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC005993.1--RGS6 HAVANA gene 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC005993.1--RGS6 HAVANA RNA 1001 4837 . + . FI_gene_label "AC005993.1^ENSG00000266869.2" ; ID "AC005993.1--RGS6^ENST00000555581.1" ; Parent "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; exon_id "ENSE00002516676.1" ; exon_number 1 ; gene_id "AC005993.1--RGS6^AC005993.1^ENSG00000266869.2" ; gene_name "AC005993.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179238.4" ; havana_transcript "OTTHUMT00000445384.1" ; level 2 ; orig_coord_info "chr14,71848606,71848736,+" ; transcript_id "AC005993.1--RGS6^ENST00000555581.1" ; transcript_name "AC005993.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
PPP4R3A--AL133373.1 HAVANA gene 21692 21785 . + . FI_gene_label "AL133373.1^ENSG00000278342.1" ; ID "PPP4R3A--AL133373.1^AL133373.1^ENSG00000278342.1" ; exon_id "ENSE00001877727.2" ; exon_number 1 ; gene_id "PPP4R3A--AL133373.1^AL133373.1^ENSG00000278342.1" ; gene_name "AL133373.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187842.1" ; havana_transcript "OTTHUMT00000475614.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr14,91554410,91554503,+" ; tag basic ; transcript_id "PPP4R3A--AL133373.1^ENST00000497098.2" ; transcript_name "AL133373.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PPP4R3A--AL133373.1 HAVANA RNA 21692 21785 . + . FI_gene_label "AL133373.1^ENSG00000278342.1" ; ID "PPP4R3A--AL133373.1^ENST00000497098.2" ; Parent "PPP4R3A--AL133373.1^AL133373.1^ENSG00000278342.1" ; exon_id "ENSE00001877727.2" ; exon_number 1 ; gene_id "PPP4R3A--AL133373.1^AL133373.1^ENSG00000278342.1" ; gene_name "AL133373.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187842.1" ; havana_transcript "OTTHUMT00000475614.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr14,91554410,91554503,+" ; tag basic ; transcript_id "PPP4R3A--AL133373.1^ENST00000497098.2" ; transcript_name "AL133373.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
PTPN20--BMS1P7 HAVANA gene 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
PTPN20--BMS1P7 HAVANA RNA 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^ENST00000602440.2" ; Parent "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
RAP1GDS1--AC019077.1 HAVANA gene 25900 27296 . + . FI_gene_label "AC019077.1^ENSG00000214559.3" ; ID "RAP1GDS1--AC019077.1^AC019077.1^ENSG00000214559.3" ; exon_id "ENSE00002072432.1" ; exon_number 1 ; gene_id "RAP1GDS1--AC019077.1^AC019077.1^ENSG00000214559.3" ; gene_name "AC019077.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160986.1" ; havana_transcript "OTTHUMT00000363272.1" ; level 2 ; orig_coord_info "chr4,98261552,98261630,-" ; tag basic ; transcript_id "RAP1GDS1--AC019077.1^ENST00000356499.2" ; transcript_name "AC019077.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
RAP1GDS1--AC019077.1 HAVANA RNA 25900 27296 . + . FI_gene_label "AC019077.1^ENSG00000214559.3" ; ID "RAP1GDS1--AC019077.1^ENST00000356499.2" ; Parent "RAP1GDS1--AC019077.1^AC019077.1^ENSG00000214559.3" ; exon_id "ENSE00002072432.1" ; exon_number 1 ; gene_id "RAP1GDS1--AC019077.1^AC019077.1^ENSG00000214559.3" ; gene_name "AC019077.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160986.1" ; havana_transcript "OTTHUMT00000363272.1" ; level 2 ; orig_coord_info "chr4,98261552,98261630,-" ; tag basic ; transcript_id "RAP1GDS1--AC019077.1^ENST00000356499.2" ; transcript_name "AC019077.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SLCO1B3--SLCO1B7 HAVANA gene 34392 35949 . + . FI_gene_label "SLCO1B7^ENSG00000205754.12" ; ID "SLCO1B3--SLCO1B7^SLCO1B7^ENSG00000205754.12" ; exon_id "ENSE00002290527.1" ; exon_number 1 ; gene_id "SLCO1B3--SLCO1B7^SLCO1B7^ENSG00000205754.12" ; gene_name SLCO1B7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000169045.3" ; havana_transcript "OTTHUMT00000402068.1" ; hgnc_id "HGNC:32934" ; level 2 ; orig_coord_info "chr12,21067351,21067383,+" ; transcript_id "SLCO1B3--SLCO1B7^ENST00000541784.1" ; transcript_name "SLCO1B7-201" ; transcript_support_level 5 ; transcript_type processed_transcript
SLCO1B3--SLCO1B7 HAVANA RNA 34392 35949 . + . FI_gene_label "SLCO1B7^ENSG00000205754.12" ; ID "SLCO1B3--SLCO1B7^ENST00000541784.1" ; Parent "SLCO1B3--SLCO1B7^SLCO1B7^ENSG00000205754.12" ; exon_id "ENSE00002290527.1" ; exon_number 1 ; gene_id "SLCO1B3--SLCO1B7^SLCO1B7^ENSG00000205754.12" ; gene_name SLCO1B7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000169045.3" ; havana_transcript "OTTHUMT00000402068.1" ; hgnc_id "HGNC:32934" ; level 2 ; orig_coord_info "chr12,21067351,21067383,+" ; transcript_id "SLCO1B3--SLCO1B7^ENST00000541784.1" ; transcript_name "SLCO1B7-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
SPATA13--AL159978.1 HAVANA gene 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--AL159978.1^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--AL159978.1^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--AL159978.1^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
SPATA13--AL159978.1 HAVANA RNA 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--AL159978.1^ENST00000439928.2" ; Parent "SPATA13--AL159978.1^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--AL159978.1^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--AL159978.1^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SPATA13--AL159978.1 HAVANA gene 33826 37418 . + . FI_gene_label "AL159978.1^ENSG00000285935.1" ; ID "SPATA13--AL159978.1^AL159978.1^ENSG00000285935.1" ; exon_id "ENSE00003835865.1" ; exon_number 1 ; gene_id "SPATA13--AL159978.1^AL159978.1^ENSG00000285935.1" ; gene_name "AL159978.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192659.1" ; havana_transcript "OTTHUMT00000498747.1" ; level 2 ; orig_coord_info "chr13,26698236,26698804,-" ; tag basic ; transcript_id "SPATA13--AL159978.1^ENST00000650558.1" ; transcript_name "AL159978.1-201" ; transcript_type lncRNA
SPATA13--AL159978.1 HAVANA RNA 33826 37418 . + . FI_gene_label "AL159978.1^ENSG00000285935.1" ; ID "SPATA13--AL159978.1^ENST00000650558.1" ; Parent "SPATA13--AL159978.1^AL159978.1^ENSG00000285935.1" ; exon_id "ENSE00003835865.1" ; exon_number 1 ; gene_id "SPATA13--AL159978.1^AL159978.1^ENSG00000285935.1" ; gene_name "AL159978.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192659.1" ; havana_transcript "OTTHUMT00000498747.1" ; level 2 ; orig_coord_info "chr13,26698236,26698804,-" ; tag basic ; transcript_id "SPATA13--AL159978.1^ENST00000650558.1" ; transcript_name "AL159978.1-201" ; transcript_type lncRNA
L1 and L2 created:
SPATA13--FGFR1OP2P1 HAVANA gene 33826 34325 . + . FI_gene_label "FGFR1OP2P1^ENSG00000230256.1" ; ID "SPATA13--FGFR1OP2P1^FGFR1OP2P1^ENSG00000230256.1" ; exon_id "ENSE00001656815.1" ; exon_number 1 ; gene_id "SPATA13--FGFR1OP2P1^FGFR1OP2P1^ENSG00000230256.1" ; gene_name FGFR1OP2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000016622.1" ; havana_transcript "OTTHUMT00000044260.1" ; hgnc_id "HGNC:39706" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,26905362,26905861,+" ; tag pseudo_consens basic ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000395943.3" ; transcript_name "FGFR1OP2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SPATA13--FGFR1OP2P1 HAVANA RNA 33826 34325 . + . FI_gene_label "FGFR1OP2P1^ENSG00000230256.1" ; ID "SPATA13--FGFR1OP2P1^ENST00000395943.3" ; Parent "SPATA13--FGFR1OP2P1^FGFR1OP2P1^ENSG00000230256.1" ; exon_id "ENSE00001656815.1" ; exon_number 1 ; gene_id "SPATA13--FGFR1OP2P1^FGFR1OP2P1^ENSG00000230256.1" ; gene_name FGFR1OP2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000016622.1" ; havana_transcript "OTTHUMT00000044260.1" ; hgnc_id "HGNC:39706" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr13,26905362,26905861,+" ; tag pseudo_consens basic ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000395943.3" ; transcript_name "FGFR1OP2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SPATA13--FGFR1OP2P1 HAVANA gene 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
SPATA13--FGFR1OP2P1 HAVANA RNA 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--FGFR1OP2P1^ENST00000439928.2" ; Parent "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--FGFR1OP2P1^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--FGFR1OP2P1^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SPATA13--GPR12 HAVANA gene 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--GPR12^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--GPR12^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--GPR12^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
SPATA13--GPR12 HAVANA RNA 1001 5872 . + . FI_gene_label "SPATA13^ENSG00000228741.2" ; ID "SPATA13--GPR12^ENST00000439928.2" ; Parent "SPATA13--GPR12^SPATA13^ENSG00000228741.2" ; exon_id "ENSE00001594685.1" ; exon_number 1 ; gene_id "SPATA13--GPR12^SPATA13^ENSG00000228741.2" ; gene_name SPATA13 ; gene_type lncRNA ; havana_gene "OTTHUMG00000016574.2" ; havana_transcript "OTTHUMT00000044174.2" ; level 2 ; orig_coord_info "chr13,23979810,23979924,+" ; tag basic ; transcript_id "SPATA13--GPR12^ENST00000439928.2" ; transcript_name "SPATA13-213" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
468 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
908 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 44 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 0 second) ------
GFF3 file parsed