#!/bin/bash -euo pipefail
read_duplication.py \
    -i tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam.bai \
    -o tih_rna_sample_00089_23H5VFLT4_s39 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION":
    rseqc: $(read_duplication.py --version | sed -e "s/read_duplication.py //g")
END_VERSIONS