Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/60e97305b1009e7f5b3994b3470288/HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/438350ea9655e318412c098d495d49/HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/95ed6ecc55076316e13212eea2687e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/95ed6ecc55076316e13212eea2687e/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 357302726
[W::hts_idx_load3] The index file is older than the data file: HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	357302726
Known Splicing Events:	354051413
Partial Novel Splicing Events:	2317175
Novel Splicing Events:	841019
Filtered Splicing Events:	93119

Total splicing  Junctions:	673112
Known Splicing Junctions:	317057
Partial Novel Splicing Junctions:	237215
Novel Splicing Junctions:	118840

===================================================================
Create BED file ...
Create Interact file ...