File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/49e7e6cff9c274edfb5c7ba95c43d8/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 339
  Pass (FILTER=PASS): 45 (13.3%)
  Fail (FILTER=FAIL): 294 (86.7%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 7
  All 7 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 61
  confidence_below_min(medium<high): 44
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 25
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 25
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 24
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
  confidence_below_min(low<high): 12
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 8
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  total_reads_below_min(6.0<8.0): 4

Breakdown by confidence:
  high: 45 pass, 15 fail (total: 60)
  low: 0 pass, 157 fail (total: 157)
  medium: 0 pass, 122 fail (total: 122)
Arriba filter: 339 rows -> 45 PASS; wrote tih_rna_sample_00251_23H5VFLT4_s03.arriba.fusions.filtered.tsv and tih_rna_sample_00251_23H5VFLT4_s03.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00251_23H5VFLT4_s03.arriba.fusions.filter_summary.txt