Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/dfbe39fa3e6b902e009f1e52b8d55a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/324b3fed37c86f95bd2f5e9d0d799a/V4_0001_RNA_0005_23H5VFLT4_s46.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/dfbe39fa3e6b902e009f1e52b8d55a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory