.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (GM24385_0001_RNA_0001_23H5VFLT4_s48)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/6c6ccd11a19455d69257816b7e8659/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (GM24385_0001_RNA_0001_23H5VFLT4_s48)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5b456d70-fab3-4fcc-916c-bc437f411fba/5f/4d32fc1f4ec7fe5ef236279e51ead4/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/6c6ccd11a19455d69257816b7e8659/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/4d587e4b31149623eb708049708331/GM24385_0001_RNA_0001_23H5VFLT4_s48.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/6c6ccd11a19455d69257816b7e8659/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/438a79db25496d68500faa4f69c334/GM24385_0001_RNA_0001_23H5VFLT4_s48.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
TVP23C--CDRT4
arriba

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Processing TVP23C--CDRT4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  8.17it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  8.15it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory