Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00087_23H5VFLT4_s17.md.bam --METRICS_FILE tih_rna_sample_00087_23H5VFLT4_s17.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:26:43.968 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:26:43 GMT 2026] MarkDuplicates --INPUT tih_rna_sample_00087_23H5VFLT4_s17.Aligned.sortedByCoord.out.bam --OUTPUT tih_rna_sample_00087_23H5VFLT4_s17.md.bam --METRICS_FILE tih_rna_sample_00087_23H5VFLT4_s17.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:26:43 GMT 2026] Executing as ?@nf-87d17b2451e285d3c597ddf938dfb0f4-5b807-t76gr on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:26:44 MarkDuplicates Start of doWork freeMemory: 105492456; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:26:44 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:26:44 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:26:47 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,375,156
INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 956 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:2,556,601
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 2132 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 08:26:51 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:7,970,941
INFO 2026-06-08 08:26:51 MarkDuplicates Tracking 3558 as yet unmatched pairs. 523 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:10,303,746
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 4318 as yet unmatched pairs. 354 records in RAM.
INFO 2026-06-08 08:26:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:12,283,127
INFO 2026-06-08 08:26:55 MarkDuplicates Tracking 5360 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 08:26:57 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:16,569,150
INFO 2026-06-08 08:26:57 MarkDuplicates Tracking 6359 as yet unmatched pairs. 690 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:19,172,913
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 7153 as yet unmatched pairs. 743 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,176,425
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 7418 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:27:03 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,829,233
INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 9694 as yet unmatched pairs. 1486 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,847,694
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 14590 as yet unmatched pairs. 5371 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:21,873,011
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 14752 as yet unmatched pairs. 4614 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,937,208
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 11287 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:23,559,199
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 13160 as yet unmatched pairs. 1125 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:26,171,308
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 12878 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:28,236,259
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 15787 as yet unmatched pairs. 2089 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,163,142
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 14956 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:33,354,526
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 15677 as yet unmatched pairs. 232 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:36,282,665
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 17094 as yet unmatched pairs. 718 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:39,422,870
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 17693 as yet unmatched pairs. 528 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:42,191,518
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 18890 as yet unmatched pairs. 900 records in RAM.
INFO 2026-06-08 08:27:28 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:43,899,592
INFO 2026-06-08 08:27:28 MarkDuplicates Tracking 19661 as yet unmatched pairs. 763 records in RAM.
INFO 2026-06-08 08:27:29 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:45,509,011
INFO 2026-06-08 08:27:29 MarkDuplicates Tracking 20029 as yet unmatched pairs. 212 records in RAM.
INFO 2026-06-08 08:27:31 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:51,465,317
INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 21216 as yet unmatched pairs. 621 records in RAM.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:53,594,643
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 22225 as yet unmatched pairs. 843 records in RAM.
INFO 2026-06-08 08:27:35 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:63,440,963
INFO 2026-06-08 08:27:35 MarkDuplicates Tracking 22592 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 08:27:37 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:75,728,462
INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 24370 as yet unmatched pairs. 1375 records in RAM.
INFO 2026-06-08 08:27:39 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:85,582,145
INFO 2026-06-08 08:27:39 MarkDuplicates Tracking 24425 as yet unmatched pairs. 676 records in RAM.
INFO 2026-06-08 08:27:41 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:92,841,765
INFO 2026-06-08 08:27:41 MarkDuplicates Tracking 26574 as yet unmatched pairs. 2043 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:108,185,936
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 26129 as yet unmatched pairs. 850 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:111,443,866
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 26965 as yet unmatched pairs. 867 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:113,941,289
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 28029 as yet unmatched pairs. 1105 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:117,987,835
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 27969 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:119,922,747
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 31707 as yet unmatched pairs. 3159 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,965,554
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 37257 as yet unmatched pairs. 7872 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:120,816,716
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 30463 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:145,395,117
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 30746 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:27:55 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:146,138,393
INFO 2026-06-08 08:27:55 MarkDuplicates Tracking 34459 as yet unmatched pairs. 3745 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:147,614,576
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 31650 as yet unmatched pairs. 541 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:148,555,106
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 31931 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,055,702
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 32392 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:149,614,741
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 32167 as yet unmatched pairs. 215 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:149,944,389
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 33025 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:150,829,920
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 34225 as yet unmatched pairs. 847 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:151,405,186
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 35708 as yet unmatched pairs. 1449 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:153,754,673
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 36133 as yet unmatched pairs. 1222 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:154,173,194
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 37366 as yet unmatched pairs. 1696 records in RAM.
INFO 2026-06-08 08:28:12 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:154,946,527
INFO 2026-06-08 08:28:12 MarkDuplicates Tracking 37251 as yet unmatched pairs. 779 records in RAM.
INFO 2026-06-08 08:28:14 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:155,480,453
INFO 2026-06-08 08:28:14 MarkDuplicates Tracking 38605 as yet unmatched pairs. 1245 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,080
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 42902 as yet unmatched pairs. 4690 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:156,325,030
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 41465 as yet unmatched pairs. 2167 records in RAM.
INFO 2026-06-08 08:28:19 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:159,781,245
INFO 2026-06-08 08:28:19 MarkDuplicates Tracking 41068 as yet unmatched pairs. 841 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:161,198,019
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 41299 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:167,765,738
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 42280 as yet unmatched pairs. 371 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:171,710,725
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 42841 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:178,893,876
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 44229 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:182,839,415
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 45536 as yet unmatched pairs. 1195 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:183,142,539
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 47812 as yet unmatched pairs. 2563 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:186,132,332
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 46356 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:186,359,945
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 50473 as yet unmatched pairs. 3823 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:200,045,490
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 50387 as yet unmatched pairs. 3025 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:201,819,836
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 48990 as yet unmatched pairs. 828 records in RAM.
INFO 2026-06-08 08:28:38 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:203,722,653
INFO 2026-06-08 08:28:38 MarkDuplicates Tracking 49683 as yet unmatched pairs. 702 records in RAM.
INFO 2026-06-08 08:28:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:205,241,541
INFO 2026-06-08 08:28:40 MarkDuplicates Tracking 49933 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:28:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:206,647,745
INFO 2026-06-08 08:28:42 MarkDuplicates Tracking 50820 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:208,217,015
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 51839 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:214,642,214
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 52684 as yet unmatched pairs. 362 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:223,003,818
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 53271 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,735
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 54808 as yet unmatched pairs. 994 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:226,881,970
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 56383 as yet unmatched pairs. 1775 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:229,526,045
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 55914 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:234,429,240
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 57238 as yet unmatched pairs. 640 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:237,490,906
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 57670 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:244,864,224
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 58845 as yet unmatched pairs. 594 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:801,366
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 59270 as yet unmatched pairs. 53161 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:9,591,485
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 60446 as yet unmatched pairs. 54216 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:11,592,970
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 66363 as yet unmatched pairs. 60047 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:11,635,307
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 66372 as yet unmatched pairs. 59966 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:20,447,930
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 63822 as yet unmatched pairs. 57340 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:26,279,250
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 64362 as yet unmatched pairs. 57788 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:27,661,254
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 64901 as yet unmatched pairs. 58260 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,230
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 65180 as yet unmatched pairs. 58434 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 401973 as yet unmatched pairs. 30274 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:33,592,085
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 425068 as yet unmatched pairs. 28426 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:39,265,287
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 424081 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,209
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 423625 as yet unmatched pairs. 26830 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:47,161,752
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 427543 as yet unmatched pairs. 30648 records in RAM.
INFO 2026-06-08 08:29:21 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:47,813,214
INFO 2026-06-08 08:29:21 MarkDuplicates Tracking 422105 as yet unmatched pairs. 25122 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:55,242,982
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 421388 as yet unmatched pairs. 24320 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:61,482,535
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 422392 as yet unmatched pairs. 25237 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:68,157,937
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 420165 as yet unmatched pairs. 22930 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:71,555,968
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 419913 as yet unmatched pairs. 22596 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:74,366,842
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 420023 as yet unmatched pairs. 22598 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:85,309,384
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 418387 as yet unmatched pairs. 20875 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:87,043,968
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 417820 as yet unmatched pairs. 20251 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:96,266,477
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 417788 as yet unmatched pairs. 20096 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:97,511,168
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 417925 as yet unmatched pairs. 20177 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:101,823,981
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 416617 as yet unmatched pairs. 18767 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:107,872,333
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 415793 as yet unmatched pairs. 17864 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:108,767,800
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 418590 as yet unmatched pairs. 20595 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:109,831,354
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 415979 as yet unmatched pairs. 17867 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:110,535,453
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 414805 as yet unmatched pairs. 16678 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:112,377,957
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 414875 as yet unmatched pairs. 16677 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:113,594,384
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 414214 as yet unmatched pairs. 16001 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:127,049,999
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 413601 as yet unmatched pairs. 15273 records in RAM.
INFO 2026-06-08 08:29:47 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:128,268,841
INFO 2026-06-08 08:29:47 MarkDuplicates Tracking 414187 as yet unmatched pairs. 15760 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:135,868,738
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 412469 as yet unmatched pairs. 13958 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:151,834,931
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 411446 as yet unmatched pairs. 12838 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:159,737,799
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 411313 as yet unmatched pairs. 12605 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:171,055,129
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 410366 as yet unmatched pairs. 11544 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:175,179,117
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 410063 as yet unmatched pairs. 11149 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:178,753,170
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 409080 as yet unmatched pairs. 10105 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:189,854,527
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 408726 as yet unmatched pairs. 9644 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:197,400,303
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 409383 as yet unmatched pairs. 10212 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:202,206,697
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 407340 as yet unmatched pairs. 8083 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:206,142,758
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 406939 as yet unmatched pairs. 7518 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:211,713,607
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 407440 as yet unmatched pairs. 7926 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,290
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 408243 as yet unmatched pairs. 8635 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:216,499,949
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 410882 as yet unmatched pairs. 11196 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:218,795,646
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 404673 as yet unmatched pairs. 4905 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:223,975,848
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 408634 as yet unmatched pairs. 8760 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:226,797,673
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 403309 as yet unmatched pairs. 3355 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:231,463,212
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 404502 as yet unmatched pairs. 4450 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:237,351,155
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 402070 as yet unmatched pairs. 1862 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:241,218,336
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 400901 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:4,205,310
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 400283 as yet unmatched pairs. 26062 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:10,305,044
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 399688 as yet unmatched pairs. 25391 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:12,836,154
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 401814 as yet unmatched pairs. 27414 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:16,377,830
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 398590 as yet unmatched pairs. 24118 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:31,615,119
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 398500 as yet unmatched pairs. 23901 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:36,856,623
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 398936 as yet unmatched pairs. 24280 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:39,088,144
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 396881 as yet unmatched pairs. 22159 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:41,235,760
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 396849 as yet unmatched pairs. 22059 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:45,967,973
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 395322 as yet unmatched pairs. 20412 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:47,848,764
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 394639 as yet unmatched pairs. 19663 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:48,583,126
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 394094 as yet unmatched pairs. 19068 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:49,026,959
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 392996 as yet unmatched pairs. 17891 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:49,530,880
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 395051 as yet unmatched pairs. 19901 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:50,096,382
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 392128 as yet unmatched pairs. 16908 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:52,054,082
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 390601 as yet unmatched pairs. 15327 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:52,768,537
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 389618 as yet unmatched pairs. 14268 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:58,500,961
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 389499 as yet unmatched pairs. 14050 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:69,042,882
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 388445 as yet unmatched pairs. 12870 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:97,872,778
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 388325 as yet unmatched pairs. 12620 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:104,865,926
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 387262 as yet unmatched pairs. 11483 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr3:114,351,224
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 387078 as yet unmatched pairs. 11203 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:122,415,324
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 386247 as yet unmatched pairs. 10257 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:124,973,804
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 385544 as yet unmatched pairs. 9436 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:128,637,999
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 384815 as yet unmatched pairs. 8630 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:132,488,387
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 384202 as yet unmatched pairs. 7923 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:138,733,360
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 383265 as yet unmatched pairs. 6878 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:139,539,496
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 388794 as yet unmatched pairs. 12340 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:148,986,474
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 381534 as yet unmatched pairs. 4988 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:158,826,051
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 381019 as yet unmatched pairs. 4358 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:172,346,196
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 381023 as yet unmatched pairs. 4273 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:183,650,713
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 380669 as yet unmatched pairs. 3810 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:184,325,358
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 379516 as yet unmatched pairs. 2587 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,226
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 378572 as yet unmatched pairs. 1548 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:195,314,809
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 377962 as yet unmatched pairs. 818 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:198,225,492
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 377216 as yet unmatched pairs. 0 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:1,693,635
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 376821 as yet unmatched pairs. 16579 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:2,898,183
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 375669 as yet unmatched pairs. 15354 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:3,947,810
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 374664 as yet unmatched pairs. 14272 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:7,868,668
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 375179 as yet unmatched pairs. 14706 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:13,579,942
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 373433 as yet unmatched pairs. 12850 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:15,382,726
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 372920 as yet unmatched pairs. 12014 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:30,789,579
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 372498 as yet unmatched pairs. 11443 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr4:42,056,571
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 372095 as yet unmatched pairs. 10978 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:56,011,976
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 371292 as yet unmatched pairs. 10104 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,011
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 373595 as yet unmatched pairs. 12319 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr4:75,782,699
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 370866 as yet unmatched pairs. 9525 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:82,356,853
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 369972 as yet unmatched pairs. 8545 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:86,014,248
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 368599 as yet unmatched pairs. 7089 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:88,262,708
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 367948 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:102,869,111
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 367872 as yet unmatched pairs. 6182 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:112,647,380
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 366878 as yet unmatched pairs. 5107 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:119,030,403
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 366833 as yet unmatched pairs. 4999 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:125,415,141
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 365616 as yet unmatched pairs. 3703 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:140,627,500
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 365094 as yet unmatched pairs. 3087 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr4:151,103,018
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 370874 as yet unmatched pairs. 8723 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:159,353,919
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 364030 as yet unmatched pairs. 1741 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:183,685,104
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 363961 as yet unmatched pairs. 1615 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:186,707,739
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 363782 as yet unmatched pairs. 1346 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:5,200,156
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 363407 as yet unmatched pairs. 23255 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:10,415,632
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 362305 as yet unmatched pairs. 22073 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:14,487,950
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 361107 as yet unmatched pairs. 20803 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,685
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 359813 as yet unmatched pairs. 19398 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:36,961,566
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 359070 as yet unmatched pairs. 18543 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:41,904,364
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 358468 as yet unmatched pairs. 17886 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:54,518,537
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 360095 as yet unmatched pairs. 19441 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:62,580,021
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 357159 as yet unmatched pairs. 16440 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr5:70,066,900
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 356402 as yet unmatched pairs. 15594 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:73,017,238
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 356164 as yet unmatched pairs. 15321 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:77,030,826
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 355329 as yet unmatched pairs. 14413 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,438
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 356043 as yet unmatched pairs. 15074 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:93,585,276
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 355218 as yet unmatched pairs. 14168 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr5:102,949,564
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 354916 as yet unmatched pairs. 13798 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:115,620,445
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 352843 as yet unmatched pairs. 11645 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:128,158,063
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 352806 as yet unmatched pairs. 11535 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:134,143,497
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 351260 as yet unmatched pairs. 9929 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:138,435,628
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 350757 as yet unmatched pairs. 9346 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:140,632,271
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 350193 as yet unmatched pairs. 8655 records in RAM.
INFO 2026-06-08 08:32:27 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr5:141,925,453
INFO 2026-06-08 08:32:27 MarkDuplicates Tracking 349691 as yet unmatched pairs. 8071 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:147,418,621
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 351199 as yet unmatched pairs. 9512 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:150,444,328
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 349494 as yet unmatched pairs. 7746 records in RAM.
INFO 2026-06-08 08:32:32 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:151,101,369
INFO 2026-06-08 08:32:32 MarkDuplicates Tracking 348436 as yet unmatched pairs. 6642 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:154,049,674
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 346718 as yet unmatched pairs. 4868 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,895
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 357974 as yet unmatched pairs. 16066 records in RAM.
INFO 2026-06-08 08:32:37 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,889
INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 350457 as yet unmatched pairs. 8536 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr5:176,410,271
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 344749 as yet unmatched pairs. 2762 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:177,601,457
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 344039 as yet unmatched pairs. 1986 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,277
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 344610 as yet unmatched pairs. 2460 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:181,237,610
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 344533 as yet unmatched pairs. 2298 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:7,181,294
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 342005 as yet unmatched pairs. 28478 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:7,581,002
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 342173 as yet unmatched pairs. 28613 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:16,295,082
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 340544 as yet unmatched pairs. 26908 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:21,677,941
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 339601 as yet unmatched pairs. 25892 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:26,217,063
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 339624 as yet unmatched pairs. 25845 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:28,270,633
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 338460 as yet unmatched pairs. 24630 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:30,730,471
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 338038 as yet unmatched pairs. 24158 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,645,463
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 337081 as yet unmatched pairs. 23171 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:32,010,335
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 337204 as yet unmatched pairs. 23251 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,045,260
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 344314 as yet unmatched pairs. 30337 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:32,053,524
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 346114 as yet unmatched pairs. 32110 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:32,061,705
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 343057 as yet unmatched pairs. 29009 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:32,069,629
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 339028 as yet unmatched pairs. 24942 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr6:32,085,912
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 340655 as yet unmatched pairs. 26503 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:32,096,907
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 333820 as yet unmatched pairs. 19595 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:32,150,739
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 331369 as yet unmatched pairs. 17079 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:33,201,299
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 329217 as yet unmatched pairs. 14872 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:34,762,686
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 328135 as yet unmatched pairs. 13723 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:37,170,878
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 327678 as yet unmatched pairs. 13207 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:43,017,195
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 326596 as yet unmatched pairs. 12049 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:43,771,255
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 327168 as yet unmatched pairs. 12574 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:52,507,476
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 325014 as yet unmatched pairs. 10378 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:56,555,509
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 325348 as yet unmatched pairs. 10564 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:73,363,151
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 323636 as yet unmatched pairs. 8776 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:82,194,567
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 323527 as yet unmatched pairs. 8586 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:89,644,014
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 322853 as yet unmatched pairs. 7825 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:107,634,347
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 322347 as yet unmatched pairs. 7252 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:112,100,689
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 321292 as yet unmatched pairs. 6113 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:118,815,625
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 320640 as yet unmatched pairs. 5407 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:130,877,790
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 319895 as yet unmatched pairs. 4579 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:136,792,223
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 319088 as yet unmatched pairs. 3692 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:148,909,403
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 318709 as yet unmatched pairs. 3216 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:151,808,222
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 319586 as yet unmatched pairs. 4020 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:158,095,626
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 317239 as yet unmatched pairs. 1580 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:163,478,796
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 316968 as yet unmatched pairs. 1228 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:832,501
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 316227 as yet unmatched pairs. 24694 records in RAM.
INFO 2026-06-08 08:34:45 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 59s. Last read position: chr7:3,848,927
INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 315049 as yet unmatched pairs. 23419 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,683
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 314501 as yet unmatched pairs. 22810 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,377
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 318980 as yet unmatched pairs. 27205 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr7:8,068,031
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 312168 as yet unmatched pairs. 20324 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,648
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 317929 as yet unmatched pairs. 25952 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr7:32,879,491
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 311234 as yet unmatched pairs. 19144 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr7:40,094,599
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 310775 as yet unmatched pairs. 18603 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr7:44,581,108
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 309964 as yet unmatched pairs. 17742 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 1s. Last read position: chr7:55,174,721
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 309669 as yet unmatched pairs. 17392 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr7:66,809,103
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 308343 as yet unmatched pairs. 15943 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr7:73,130,469
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 307575 as yet unmatched pairs. 15082 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:74,519,451
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 307719 as yet unmatched pairs. 15193 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr7:75,217,192
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 307487 as yet unmatched pairs. 14918 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,947
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 307640 as yet unmatched pairs. 15043 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr7:87,184,594
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 306897 as yet unmatched pairs. 14224 records in RAM.
INFO 2026-06-08 08:35:09 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:92,079,408
INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 306722 as yet unmatched pairs. 13992 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr7:94,603,332
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 304499 as yet unmatched pairs. 11730 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:99,389,909
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 303711 as yet unmatched pairs. 10865 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,568
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 303412 as yet unmatched pairs. 10511 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:101,215,923
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 302079 as yet unmatched pairs. 9141 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr7:102,555,831
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 302718 as yet unmatched pairs. 9726 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:105,111,823
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 301408 as yet unmatched pairs. 8362 records in RAM.
INFO 2026-06-08 08:35:19 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:107,937,163
INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 302251 as yet unmatched pairs. 9136 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:121,097,791
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 299693 as yet unmatched pairs. 6491 records in RAM.
INFO 2026-06-08 08:35:22 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr7:128,084,818
INFO 2026-06-08 08:35:22 MarkDuplicates Tracking 301969 as yet unmatched pairs. 8707 records in RAM.
INFO 2026-06-08 08:35:24 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:133,741,703
INFO 2026-06-08 08:35:24 MarkDuplicates Tracking 298518 as yet unmatched pairs. 5178 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:138,554,738
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 299856 as yet unmatched pairs. 6470 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:140,024,528
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 297080 as yet unmatched pairs. 3640 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr7:143,876,385
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 297365 as yet unmatched pairs. 3863 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr7:150,952,566
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 295877 as yet unmatched pairs. 2307 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr7:152,247,972
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 294663 as yet unmatched pairs. 1021 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:6,502,387
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 293763 as yet unmatched pairs. 16508 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:11,845,671
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 297409 as yet unmatched pairs. 20106 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:18,556,295
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 293837 as yet unmatched pairs. 16449 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:19,954,204
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 292347 as yet unmatched pairs. 14885 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:23,288,145
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 291274 as yet unmatched pairs. 13763 records in RAM.
INFO 2026-06-08 08:35:42 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:29,124,072
INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 290114 as yet unmatched pairs. 12560 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:38,246,286
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 289749 as yet unmatched pairs. 12160 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:41,615,031
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 289050 as yet unmatched pairs. 11410 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:47,879,629
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 288227 as yet unmatched pairs. 10535 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:61,202,493
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 287212 as yet unmatched pairs. 9461 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,240
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 288217 as yet unmatched pairs. 10415 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:93,734,747
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 286199 as yet unmatched pairs. 8323 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:98,044,953
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 287486 as yet unmatched pairs. 9559 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:101,829,735
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 284601 as yet unmatched pairs. 6596 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:108,240,161
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 292664 as yet unmatched pairs. 14568 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr8:123,501,933
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 283315 as yet unmatched pairs. 5140 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:129,854,288
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 282784 as yet unmatched pairs. 4510 records in RAM.
INFO 2026-06-08 08:36:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:143,021,374
INFO 2026-06-08 08:36:01 MarkDuplicates Tracking 285420 as yet unmatched pairs. 7059 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:143,818,014
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 281103 as yet unmatched pairs. 2686 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:144,311,238
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 280144 as yet unmatched pairs. 1659 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:144,946,125
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 278647 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,132
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 278168 as yet unmatched pairs. 18755 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:20,365,585
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 277582 as yet unmatched pairs. 18108 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:33,472,269
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 276817 as yet unmatched pairs. 17268 records in RAM.
INFO 2026-06-08 08:36:12 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:35,699,042
INFO 2026-06-08 08:36:12 MarkDuplicates Tracking 276558 as yet unmatched pairs. 16945 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:37,746,493
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 275033 as yet unmatched pairs. 15374 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:71,730,104
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 274832 as yet unmatched pairs. 15067 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr9:85,958,488
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 274890 as yet unmatched pairs. 15067 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:89,393,578
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 273498 as yet unmatched pairs. 13601 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:95,082,592
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 273111 as yet unmatched pairs. 13175 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr9:99,985,051
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 272317 as yet unmatched pairs. 12315 records in RAM.
INFO 2026-06-08 08:36:23 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:110,048,746
INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 271679 as yet unmatched pairs. 11638 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:114,356,886
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 270405 as yet unmatched pairs. 10317 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:117,712,536
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 269622 as yet unmatched pairs. 9470 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:124,500,454
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 269180 as yet unmatched pairs. 8984 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:127,829,687
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 268199 as yet unmatched pairs. 7940 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:128,626,515
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 267726 as yet unmatched pairs. 7415 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:130,714,322
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 266517 as yet unmatched pairs. 6162 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:131,474,606
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 266949 as yet unmatched pairs. 6547 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,967
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 264865 as yet unmatched pairs. 4382 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:134,033,686
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 264680 as yet unmatched pairs. 4111 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,276
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 263254 as yet unmatched pairs. 2624 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:137,024,190
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 262080 as yet unmatched pairs. 1383 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:137,986,448
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 261059 as yet unmatched pairs. 304 records in RAM.
INFO 2026-06-08 08:36:44 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:5,768,309
INFO 2026-06-08 08:36:44 MarkDuplicates Tracking 261382 as yet unmatched pairs. 18501 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:14,839,923
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 259778 as yet unmatched pairs. 16814 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr10:17,234,719
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 264343 as yet unmatched pairs. 21317 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:24,327,233
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 258010 as yet unmatched pairs. 14904 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:30,027,959
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 259331 as yet unmatched pairs. 16173 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:32,337,463
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 256872 as yet unmatched pairs. 13673 records in RAM.
INFO 2026-06-08 08:36:55 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:35,428,394
INFO 2026-06-08 08:36:55 MarkDuplicates Tracking 256835 as yet unmatched pairs. 13586 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:46,014,529
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 257578 as yet unmatched pairs. 14277 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:49,861,551
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 254913 as yet unmatched pairs. 11568 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:60,911,362
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 254986 as yet unmatched pairs. 11598 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:70,032,510
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 253538 as yet unmatched pairs. 10093 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:73,760,091
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 253262 as yet unmatched pairs. 9759 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:77,809,589
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 252326 as yet unmatched pairs. 8760 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:80,422,496
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 251674 as yet unmatched pairs. 8060 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:88,948,801
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 251626 as yet unmatched pairs. 7963 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:95,682,649
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 250309 as yet unmatched pairs. 6563 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:99,930,659
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 249338 as yet unmatched pairs. 5546 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:102,148,425
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 248724 as yet unmatched pairs. 4880 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:103,898,923
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 247822 as yet unmatched pairs. 3895 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:115,129,507
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 247610 as yet unmatched pairs. 3639 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:122,461,701
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 247059 as yet unmatched pairs. 3046 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:125,880,802
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 245238 as yet unmatched pairs. 1165 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:133,246,937
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 244462 as yet unmatched pairs. 312 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:533,849
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 243810 as yet unmatched pairs. 29234 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,620
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 242826 as yet unmatched pairs. 28205 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:6,271,243
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 242364 as yet unmatched pairs. 27698 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:8,750,216
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 241618 as yet unmatched pairs. 26924 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:11,353,056
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 240421 as yet unmatched pairs. 25684 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:18,347,895
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 239951 as yet unmatched pairs. 25161 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr11:27,385,273
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 241709 as yet unmatched pairs. 26877 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:33,353,238
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 238076 as yet unmatched pairs. 23204 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:45,224,611
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 237442 as yet unmatched pairs. 22498 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:46,795,651
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 237147 as yet unmatched pairs. 22161 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:57,712,725
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 235912 as yet unmatched pairs. 20899 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:61,329,386
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 235618 as yet unmatched pairs. 20569 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:62,594,560
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 234424 as yet unmatched pairs. 19336 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:63,768,483
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 233409 as yet unmatched pairs. 18276 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:64,878,324
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 232888 as yet unmatched pairs. 17733 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:65,502,320
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 231821 as yet unmatched pairs. 16596 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,834
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 232529 as yet unmatched pairs. 17251 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:66,266,481
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 229636 as yet unmatched pairs. 14337 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:67,401,126
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 228796 as yet unmatched pairs. 13467 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:68,446,487
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 228667 as yet unmatched pairs. 13321 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:72,015,090
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 226976 as yet unmatched pairs. 11603 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:73,720,847
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 227232 as yet unmatched pairs. 11826 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:75,571,982
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 225320 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:78,688,095
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 224691 as yet unmatched pairs. 9206 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:86,808,705
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 225608 as yet unmatched pairs. 10045 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:95,914,259
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 223097 as yet unmatched pairs. 7477 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,884
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 229789 as yet unmatched pairs. 14136 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:104,000,174
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 221413 as yet unmatched pairs. 5725 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:114,061,501
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 221521 as yet unmatched pairs. 5792 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:117,281,953
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 220153 as yet unmatched pairs. 4389 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:118,901,436
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 219215 as yet unmatched pairs. 3416 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:121,496,890
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 218495 as yet unmatched pairs. 2658 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr11:124,767,194
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 217607 as yet unmatched pairs. 1731 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:129,881,486
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 217088 as yet unmatched pairs. 1170 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:16,968
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 216178 as yet unmatched pairs. 24874 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:4,288,922
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 216989 as yet unmatched pairs. 25651 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr12:6,593,492
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 214784 as yet unmatched pairs. 23407 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:7,090,141
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 214809 as yet unmatched pairs. 23411 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:11,650,104
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 213459 as yet unmatched pairs. 22032 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:22,470,855
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 212770 as yet unmatched pairs. 21315 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:31,281,212
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 211345 as yet unmatched pairs. 19840 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:38,677,409
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 211313 as yet unmatched pairs. 19769 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:45,928,300
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 211370 as yet unmatched pairs. 19791 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr12:48,918,262
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 209460 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:49,083,963
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 208470 as yet unmatched pairs. 16843 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,351
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 210682 as yet unmatched pairs. 19031 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:50,085,448
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 207147 as yet unmatched pairs. 15454 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:53,297,858
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 209669 as yet unmatched pairs. 17950 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:53,713,185
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 205910 as yet unmatched pairs. 14156 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:55,413,240
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 205626 as yet unmatched pairs. 13830 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr12:56,206,777
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 204280 as yet unmatched pairs. 12467 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,632
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 209744 as yet unmatched pairs. 17914 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,162,897
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 203402 as yet unmatched pairs. 11559 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr12:57,528,187
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 201945 as yet unmatched pairs. 10059 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:65,825,166
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 201380 as yet unmatched pairs. 9454 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:71,755,124
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 200279 as yet unmatched pairs. 8312 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:93,409,877
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 199805 as yet unmatched pairs. 7811 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:100,612,020
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 199098 as yet unmatched pairs. 7074 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:106,429,727
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 198380 as yet unmatched pairs. 6333 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:110,492,059
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 198999 as yet unmatched pairs. 6911 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:112,453,213
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 197277 as yet unmatched pairs. 5164 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:118,073,840
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 196111 as yet unmatched pairs. 3959 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:121,004,160
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 195341 as yet unmatched pairs. 3151 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:123,294,312
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 194455 as yet unmatched pairs. 2235 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,957,028
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 193829 as yet unmatched pairs. 1566 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:132,676,609
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 192997 as yet unmatched pairs. 704 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr13:20,061,094
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 193418 as yet unmatched pairs. 9342 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr13:27,253,796
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 194064 as yet unmatched pairs. 9958 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:36,312,368
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 191314 as yet unmatched pairs. 7167 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr13:42,300,926
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 190405 as yet unmatched pairs. 6191 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:49,058,136
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 189721 as yet unmatched pairs. 5476 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr13:72,908,668
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 188917 as yet unmatched pairs. 4636 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:95,641,420
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 188301 as yet unmatched pairs. 3953 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr13:100,668,608
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 187504 as yet unmatched pairs. 3107 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:110,213,997
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 188422 as yet unmatched pairs. 3999 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:110,880,027
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 186200 as yet unmatched pairs. 1726 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr13:114,326,138
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 184582 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:21,353,705
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 183874 as yet unmatched pairs. 16181 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr14:23,063,559
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 183995 as yet unmatched pairs. 16286 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:24,166,181
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 183654 as yet unmatched pairs. 15890 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr14:31,364,201
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 181556 as yet unmatched pairs. 13768 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:39,176,531
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 181397 as yet unmatched pairs. 13544 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:49,799,478
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 180105 as yet unmatched pairs. 12218 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:52,014,423
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 182986 as yet unmatched pairs. 15070 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:55,063,173
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 178699 as yet unmatched pairs. 10754 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:59,347,261
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 178987 as yet unmatched pairs. 11015 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:63,949,942
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 178702 as yet unmatched pairs. 10688 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr14:64,186,448
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 177585 as yet unmatched pairs. 9550 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr14:64,440,219
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 175953 as yet unmatched pairs. 7878 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:68,921,014
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 175374 as yet unmatched pairs. 7272 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:73,492,516
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 174288 as yet unmatched pairs. 6148 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr14:75,651,792
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 173703 as yet unmatched pairs. 5545 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:88,563,066
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 173069 as yet unmatched pairs. 4883 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:92,711,697
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 172286 as yet unmatched pairs. 4065 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr14:96,527,478
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 171826 as yet unmatched pairs. 3579 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr14:102,081,742
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 171250 as yet unmatched pairs. 2947 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:103,735,036
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 170229 as yet unmatched pairs. 1893 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr15:20,410,545
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 168521 as yet unmatched pairs. 17796 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:22,564,395
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 169517 as yet unmatched pairs. 18781 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr15:24,961,621
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 168128 as yet unmatched pairs. 17349 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:28,233,043
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 167276 as yet unmatched pairs. 16465 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:28,842,270
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 165998 as yet unmatched pairs. 15176 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:30,720,848
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 165361 as yet unmatched pairs. 14514 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr15:34,343,021
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 164757 as yet unmatched pairs. 13887 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr15:39,588,558
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 165654 as yet unmatched pairs. 14750 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:41,669,470
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 164918 as yet unmatched pairs. 14004 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:42,669,195
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 162582 as yet unmatched pairs. 11647 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr15:43,800,643
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 162086 as yet unmatched pairs. 11145 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:48,151,484
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 161150 as yet unmatched pairs. 10185 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr15:51,938,183
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 160422 as yet unmatched pairs. 9432 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:57,708,755
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 160642 as yet unmatched pairs. 9623 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr15:63,263,804
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 158881 as yet unmatched pairs. 7839 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:65,530,675
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 159374 as yet unmatched pairs. 8305 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:67,165,343
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 158767 as yet unmatched pairs. 7681 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:72,345,538
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 156897 as yet unmatched pairs. 5785 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:74,837,180
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 155957 as yet unmatched pairs. 4821 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:75,689,178
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 154881 as yet unmatched pairs. 3719 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:81,323,609
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 153927 as yet unmatched pairs. 2732 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:85,075,905
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 153459 as yet unmatched pairs. 2243 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:90,492,632
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 152978 as yet unmatched pairs. 1742 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:98,891,290
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 152263 as yet unmatched pairs. 973 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr16:297,907
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 151506 as yet unmatched pairs. 21478 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:950,859
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 149944 as yet unmatched pairs. 19892 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:2,002,619
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 148904 as yet unmatched pairs. 18843 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,461,712
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 147484 as yet unmatched pairs. 17403 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,116
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 148097 as yet unmatched pairs. 18003 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:3,773,831
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 146278 as yet unmatched pairs. 16164 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:8,772,791
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 145220 as yet unmatched pairs. 15078 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:14,251,892
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 144606 as yet unmatched pairs. 14452 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:14,951,975
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 143758 as yet unmatched pairs. 13596 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:16,310,520
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 143164 as yet unmatched pairs. 12995 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:16,393,765
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 143730 as yet unmatched pairs. 13553 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,912
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 143669 as yet unmatched pairs. 13484 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:20,737,738
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 142174 as yet unmatched pairs. 11975 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,075
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 141606 as yet unmatched pairs. 11390 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,940
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 141512 as yet unmatched pairs. 11282 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:27,220,625
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 140742 as yet unmatched pairs. 10498 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:28,734,553
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 140202 as yet unmatched pairs. 9945 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:29,404,300
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 139984 as yet unmatched pairs. 9713 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:29,814,373
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 138965 as yet unmatched pairs. 8683 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:30,277,618
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 138310 as yet unmatched pairs. 8020 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr16:30,958,818
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 137326 as yet unmatched pairs. 7020 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:31,190,069
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 137910 as yet unmatched pairs. 7587 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:50,368,107
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 135677 as yet unmatched pairs. 5320 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:61,055,835
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 134875 as yet unmatched pairs. 4509 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:67,940,249
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 134061 as yet unmatched pairs. 3679 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:70,142,153
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 133202 as yet unmatched pairs. 2805 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:74,978,815
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 132408 as yet unmatched pairs. 1994 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:85,805,078
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 131805 as yet unmatched pairs. 1358 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:89,910,591
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 131059 as yet unmatched pairs. 590 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:1,496,360
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 129823 as yet unmatched pairs. 34340 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:2,696,898
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 129269 as yet unmatched pairs. 33761 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 127s. Last read position: chr17:4,972,456
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 128574 as yet unmatched pairs. 33058 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:7,237,424
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 127324 as yet unmatched pairs. 31798 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr17:7,578,360
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 126688 as yet unmatched pairs. 31161 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:8,521,196
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 127009 as yet unmatched pairs. 31469 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:16,171,915
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 125185 as yet unmatched pairs. 29636 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr17:18,245,616
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 123887 as yet unmatched pairs. 28320 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:20,270,845
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 124528 as yet unmatched pairs. 28951 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:28,618,942
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 122366 as yet unmatched pairs. 26780 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:29,517,484
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 121763 as yet unmatched pairs. 26164 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 1s. Last read position: chr17:31,998,756
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 120705 as yet unmatched pairs. 25094 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,094
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 120204 as yet unmatched pairs. 24586 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,027
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 119286 as yet unmatched pairs. 23660 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:39,201,217
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 121565 as yet unmatched pairs. 25921 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,367
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 119053 as yet unmatched pairs. 23392 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr17:41,813,268
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 117650 as yet unmatched pairs. 21968 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr17:42,547,521
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 118891 as yet unmatched pairs. 23184 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr17:42,564,985
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 116140 as yet unmatched pairs. 20421 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr17:44,091,428
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 115150 as yet unmatched pairs. 19416 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr17:45,548,145
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 113344 as yet unmatched pairs. 17600 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:47,592,536
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 113314 as yet unmatched pairs. 17550 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,095,751
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 111907 as yet unmatched pairs. 16129 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,572
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 119065 as yet unmatched pairs. 23279 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,490
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 118079 as yet unmatched pairs. 22281 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,947
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 115446 as yet unmatched pairs. 19646 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,760
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 114415 as yet unmatched pairs. 18607 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:57,257,111
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 108696 as yet unmatched pairs. 12877 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr17:59,668,791
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 108497 as yet unmatched pairs. 12648 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:61,982,187
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 105810 as yet unmatched pairs. 9947 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:63,818,089
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 105250 as yet unmatched pairs. 9370 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:67,107,449
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 104395 as yet unmatched pairs. 8502 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:68,876,631
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 103587 as yet unmatched pairs. 7685 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:74,864,121
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 103550 as yet unmatched pairs. 7621 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,626,145
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 101641 as yet unmatched pairs. 5697 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:77,205,304
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 100741 as yet unmatched pairs. 4786 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:79,784,854
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 99783 as yet unmatched pairs. 3812 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chr17:80,376,299
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 99348 as yet unmatched pairs. 3356 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,539
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 98093 as yet unmatched pairs. 2087 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 2s. Last read position: chr17:82,322,305
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 96656 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr18:2,927,777
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 98015 as yet unmatched pairs. 9902 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr18:8,825,487
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 95256 as yet unmatched pairs. 7133 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr18:21,454,551
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 94463 as yet unmatched pairs. 6315 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr18:26,018,362
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 95693 as yet unmatched pairs. 7531 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr18:27,985,652
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 95155 as yet unmatched pairs. 6976 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr18:35,692,306
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 92271 as yet unmatched pairs. 4065 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr18:46,098,170
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 91037 as yet unmatched pairs. 2804 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr18:49,565,383
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 90585 as yet unmatched pairs. 2328 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr18:58,537,951
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 89736 as yet unmatched pairs. 1463 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr18:75,201,865
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 89100 as yet unmatched pairs. 802 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:871,945
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 87944 as yet unmatched pairs. 36677 records in RAM.
INFO 2026-06-08 08:44:55 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:1,438,826
INFO 2026-06-08 08:44:55 MarkDuplicates Tracking 92560 as yet unmatched pairs. 41290 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:2,124,707
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 86087 as yet unmatched pairs. 34810 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:3,053,991
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 85018 as yet unmatched pairs. 33736 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:4,366,973
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 83255 as yet unmatched pairs. 31950 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:5,258,071
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 85018 as yet unmatched pairs. 33705 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:7,152,894
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 81420 as yet unmatched pairs. 30106 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 2s. Last read position: chr19:8,321,974
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 82077 as yet unmatched pairs. 30756 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:10,323,200
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 79711 as yet unmatched pairs. 28373 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:11,176,760
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 78455 as yet unmatched pairs. 27106 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:12,711,440
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 78329 as yet unmatched pairs. 26974 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:14,102,897
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 78566 as yet unmatched pairs. 27209 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:15,253,550
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 80896 as yet unmatched pairs. 29534 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 2s. Last read position: chr19:16,555,215
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 74896 as yet unmatched pairs. 23526 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:18,008,478
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 73703 as yet unmatched pairs. 22324 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:18,749,788
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 74033 as yet unmatched pairs. 22652 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:20,615,900
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 71582 as yet unmatched pairs. 20198 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:33,379,341
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 70905 as yet unmatched pairs. 19506 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:35,648,378
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 70109 as yet unmatched pairs. 18704 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:36,664,699
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 68593 as yet unmatched pairs. 17182 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:38,815,981
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 68135 as yet unmatched pairs. 16718 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr19:39,826,722
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 67570 as yet unmatched pairs. 16149 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 2s. Last read position: chr19:40,611,300
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 66225 as yet unmatched pairs. 14797 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:42,199,772
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 64726 as yet unmatched pairs. 13290 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:43,552,200
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 64297 as yet unmatched pairs. 12845 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:45,357,276
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 63212 as yet unmatched pairs. 11756 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:45,885,103
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 61712 as yet unmatched pairs. 10239 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:47,493,135
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 60480 as yet unmatched pairs. 9005 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,223
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 59701 as yet unmatched pairs. 8219 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:49,601,539
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 58636 as yet unmatched pairs. 7152 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:49,865,295
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 57880 as yet unmatched pairs. 6389 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:52,222,153
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 57400 as yet unmatched pairs. 5908 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:53,873,558
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 56669 as yet unmatched pairs. 5158 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:55,294,221
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 54663 as yet unmatched pairs. 3139 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:56,814,092
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 60275 as yet unmatched pairs. 8744 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:57,620,990
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 53130 as yet unmatched pairs. 1596 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:58,388,179
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 56543 as yet unmatched pairs. 5006 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:1,369,992
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 53607 as yet unmatched pairs. 15646 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr20:3,785,324
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 50330 as yet unmatched pairs. 12352 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr20:16,737,346
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 49472 as yet unmatched pairs. 11486 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr20:21,386,875
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 49075 as yet unmatched pairs. 11085 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr20:32,234,516
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 47818 as yet unmatched pairs. 9825 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:34,919,300
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 46992 as yet unmatched pairs. 8992 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr20:36,222,346
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 46105 as yet unmatched pairs. 8099 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:38,488,457
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 45193 as yet unmatched pairs. 7181 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr20:43,534,919
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 44229 as yet unmatched pairs. 6217 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr20:46,735,788
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 43098 as yet unmatched pairs. 5082 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr20:50,898,948
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 42850 as yet unmatched pairs. 4830 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr20:58,997,609
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 41892 as yet unmatched pairs. 3869 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr20:62,882,326
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 40665 as yet unmatched pairs. 2634 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr20:63,688,578
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 41176 as yet unmatched pairs. 3138 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:63,981,175
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 38472 as yet unmatched pairs. 431 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,377
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 37319 as yet unmatched pairs. 5506 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,415
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 36700 as yet unmatched pairs. 4885 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr21:16,255,990
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 35787 as yet unmatched pairs. 3961 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr21:32,317,687
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 35463 as yet unmatched pairs. 3621 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:33,814,003
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 34467 as yet unmatched pairs. 2624 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr21:43,419,059
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 33695 as yet unmatched pairs. 1845 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr21:46,119,071
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 32515 as yet unmatched pairs. 653 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr22:19,361,260
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 31610 as yet unmatched pairs. 8396 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:21,446,590
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 30449 as yet unmatched pairs. 7235 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr22:23,396,166
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 30238 as yet unmatched pairs. 7018 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr22:27,982,188
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 28514 as yet unmatched pairs. 5289 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:30,345,040
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 28120 as yet unmatched pairs. 4893 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr22:36,326,570
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 27620 as yet unmatched pairs. 4385 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr22:39,024,292
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 25903 as yet unmatched pairs. 2657 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:41,589,719
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 25120 as yet unmatched pairs. 1873 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr22:50,220,731
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 24562 as yet unmatched pairs. 1313 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chrX:2,490,195
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 22945 as yet unmatched pairs. 18045 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chrX:14,730,326
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 22045 as yet unmatched pairs. 17143 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chrX:24,006,370
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 21189 as yet unmatched pairs. 16270 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:38,681,252
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 24706 as yet unmatched pairs. 19787 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:43,793,495
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 22480 as yet unmatched pairs. 17560 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chrX:47,209,965
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 20313 as yet unmatched pairs. 15392 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:48,600,345
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 19326 as yet unmatched pairs. 14402 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chrX:52,067,199
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 16896 as yet unmatched pairs. 11971 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chrX:53,552,680
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 17992 as yet unmatched pairs. 13066 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chrX:54,237,349
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 15316 as yet unmatched pairs. 10390 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chrX:64,192,901
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 14361 as yet unmatched pairs. 9435 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chrX:71,290,706
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 14452 as yet unmatched pairs. 9526 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chrX:74,212,976
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 12644 as yet unmatched pairs. 7718 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chrX:81,115,084
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 12001 as yet unmatched pairs. 7075 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:102,654,663
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 11711 as yet unmatched pairs. 6784 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chrX:109,682,719
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 11546 as yet unmatched pairs. 6618 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chrX:120,072,762
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 9750 as yet unmatched pairs. 4822 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chrX:130,496,157
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 9025 as yet unmatched pairs. 4097 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:148,662,204
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 8802 as yet unmatched pairs. 3874 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chrX:153,957,877
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 7951 as yet unmatched pairs. 3023 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,515
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 8617 as yet unmatched pairs. 3689 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chrX:154,468,448
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 5571 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 2s. Last read position: chrM:7,901
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 4957 as yet unmatched pairs. 624 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,776
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 4158 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 0s. Last read position: KI270711.1:24,582
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 3454 as yet unmatched pairs. 141 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,584
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1852 as yet unmatched pairs. 1827 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 640594790 records. 0 pairs never matched.
INFO 2026-06-08 08:48:13 MarkDuplicates After buildSortedReadEndLists freeMemory: 204137504; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:48:13 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:48:17 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:48:17 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,631
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,538
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 08:48:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,769
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,846
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,987
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 08:48:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,940
INFO 2026-06-08 08:49:10 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 08:49:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,501
INFO 2026-06-08 08:49:12 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 08:49:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,421
INFO 2026-06-08 08:49:25 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:49:25 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:50:31 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:50:40 MarkDuplicates After generateDuplicateIndexes freeMemory: 10792695432; totalMemory: 26742882304; maxMemory: 63585648640
INFO 2026-06-08 08:50:40 MarkDuplicates Marking 249895946 records as duplicates.
INFO 2026-06-08 08:50:40 MarkDuplicates Found 34615082 optical duplicate clusters.
INFO 2026-06-08 08:50:40 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:50:56 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,847,694
INFO 2026-06-08 08:51:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:42,191,518
INFO 2026-06-08 08:51:30 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:111,443,866
INFO 2026-06-08 08:51:46 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:149,055,702
INFO 2026-06-08 08:52:02 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 15s. Last read position: chr1:156,325,030
INFO 2026-06-08 08:52:19 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:38s. Time for last 10,000,000: 16s. Last read position: chr1:200,045,490
INFO 2026-06-08 08:52:35 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 15s. Last read position: chr1:229,526,045
INFO 2026-06-08 08:52:51 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:27,661,254
INFO 2026-06-08 08:53:07 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 16s. Last read position: chr2:68,157,937
INFO 2026-06-08 08:53:23 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 16s. Last read position: chr2:109,831,354
INFO 2026-06-08 08:53:39 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 16s. Last read position: chr2:175,179,117
INFO 2026-06-08 08:53:56 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 16s. Last read position: chr2:223,975,848
INFO 2026-06-08 08:54:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 16s. Last read position: chr3:36,856,623
INFO 2026-06-08 08:54:28 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 15s. Last read position: chr3:52,768,537
INFO 2026-06-08 08:54:44 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:03s. Time for last 10,000,000: 16s. Last read position: chr3:138,733,360
INFO 2026-06-08 08:55:00 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 16s. Last read position: chr4:1,693,635
INFO 2026-06-08 08:55:16 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 16s. Last read position: chr4:75,782,699
INFO 2026-06-08 08:55:33 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 16s. Last read position: chr4:159,353,919
INFO 2026-06-08 08:55:49 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 15s. Last read position: chr5:62,580,021
INFO 2026-06-08 08:56:05 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 16s. Last read position: chr5:138,435,628
INFO 2026-06-08 08:56:21 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 16s. Last read position: chr5:177,601,457
INFO 2026-06-08 08:56:37 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 16s. Last read position: chr6:31,645,463
INFO 2026-06-08 08:56:53 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr6:34,762,686
INFO 2026-06-08 08:57:09 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 16s. Last read position: chr6:112,100,689
INFO 2026-06-08 08:57:25 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:44s. Time for last 10,000,000: 16s. Last read position: chr7:5,388,683
INFO 2026-06-08 08:57:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:00s. Time for last 10,000,000: 16s. Last read position: chr7:74,519,451
INFO 2026-06-08 08:57:57 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:16s. Time for last 10,000,000: 15s. Last read position: chr7:105,111,823
INFO 2026-06-08 08:58:13 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 16s. Last read position: chr8:6,502,387
INFO 2026-06-08 08:58:29 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 16s. Last read position: chr8:73,292,240
INFO 2026-06-08 08:58:45 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 15s. Last read position: chr8:144,946,125
INFO 2026-06-08 08:59:01 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:20s. Time for last 10,000,000: 16s. Last read position: chr9:99,985,051
INFO 2026-06-08 08:59:17 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:37s. Time for last 10,000,000: 16s. Last read position: chr9:134,033,686
INFO 2026-06-08 08:59:33 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 15s. Last read position: chr10:35,428,394
INFO 2026-06-08 08:59:49 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:09s. Time for last 10,000,000: 16s. Last read position: chr10:99,930,659
INFO 2026-06-08 09:00:05 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 15s. Last read position: chr11:8,750,216
INFO 2026-06-08 09:00:21 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 16s. Last read position: chr11:63,768,483
INFO 2026-06-08 09:00:37 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 15s. Last read position: chr11:78,688,095
INFO 2026-06-08 09:00:53 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:129,881,486
INFO 2026-06-08 09:01:09 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:28s. Time for last 10,000,000: 15s. Last read position: chr12:48,918,262
INFO 2026-06-08 09:01:25 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:44s. Time for last 10,000,000: 15s. Last read position: chr12:57,528,187
INFO 2026-06-08 09:01:41 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 16s. Last read position: chr12:123,294,312
INFO 2026-06-08 09:01:57 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:16s. Time for last 10,000,000: 16s. Last read position: chr13:100,668,608
INFO 2026-06-08 09:02:13 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:32s. Time for last 10,000,000: 15s. Last read position: chr14:52,014,423
INFO 2026-06-08 09:02:29 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:48s. Time for last 10,000,000: 16s. Last read position: chr14:92,711,697
INFO 2026-06-08 09:02:45 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 15s. Last read position: chr15:34,343,021
INFO 2026-06-08 09:03:01 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:20s. Time for last 10,000,000: 16s. Last read position: chr15:67,165,343
INFO 2026-06-08 09:03:17 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:36s. Time for last 10,000,000: 15s. Last read position: chr16:2,002,619
INFO 2026-06-08 09:03:33 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 15s. Last read position: chr16:20,737,738
INFO 2026-06-08 09:03:48 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 15s. Last read position: chr16:50,368,107
INFO 2026-06-08 09:04:04 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:24s. Time for last 10,000,000: 16s. Last read position: chr17:7,237,424
INFO 2026-06-08 09:04:20 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:40s. Time for last 10,000,000: 15s. Last read position: chr17:38,138,027
INFO 2026-06-08 09:04:36 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:55s. Time for last 10,000,000: 15s. Last read position: chr17:50,188,572
INFO 2026-06-08 09:04:52 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 15s. Last read position: chr17:74,864,121
INFO 2026-06-08 09:05:08 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 15s. Last read position: chr18:26,018,362
INFO 2026-06-08 09:05:24 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:43s. Time for last 10,000,000: 16s. Last read position: chr19:3,053,991
INFO 2026-06-08 09:05:40 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 15s. Last read position: chr19:16,555,215
INFO 2026-06-08 09:05:56 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 15s. Last read position: chr19:42,199,772
INFO 2026-06-08 09:06:11 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 15s. Last read position: chr19:55,294,221
INFO 2026-06-08 09:06:27 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 15s. Last read position: chr20:36,222,346
INFO 2026-06-08 09:06:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 15s. Last read position: chr21:8,400,415
INFO 2026-06-08 09:06:58 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:17s. Time for last 10,000,000: 15s. Last read position: chr22:30,345,040
INFO 2026-06-08 09:07:15 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:34s. Time for last 10,000,000: 16s. Last read position: chrX:47,209,965
INFO 2026-06-08 09:07:31 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 16s. Last read position: chrX:109,682,719
INFO 2026-06-08 09:07:46 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 15s. Last read position: KI270733.1:174,584
INFO 2026-06-08 09:07:55 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:07:55 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:07:55 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:07:55 MarkDuplicates Before output close freeMemory: 201712816; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:07:55 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:07:55 MarkDuplicates After output close freeMemory: 104181520; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:07:55 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.19 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory