Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/8d432c446378cdfa451744f7f1e317/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/8d432c446378cdfa451744f7f1e317/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/65317c0d7e01654d97a67aea9d5671/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/60cca2875f49132e8930798965d69a/tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 338237478
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00089_23H5VFLT4_s39.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	338237478
Known Splicing Events:	335290701
Partial Novel Splicing Events:	1767172
Novel Splicing Events:	1063413
Filtered Splicing Events:	116192

Total splicing  Junctions:	632013
Known Splicing Junctions:	286160
Partial Novel Splicing Junctions:	177094
Novel Splicing Junctions:	168759

===================================================================
Create BED file ...
Create Interact file ...