Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/dd810a88c16aa6e827b8247e7e50a6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/dd810a88c16aa6e827b8247e7e50a6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/9689e52dbdaac8dfbbab860e49e910/V4_0001_RNA_0005_23H5VFLT4_s31.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bb53baa34a2d62fecad9a9ce7d57b8/V4_0001_RNA_0005_23H5VFLT4_s31.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory