Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9055d4b0da3d2fb2a1c6cf662c7616/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/fb72968d53bcd7486e6f8853c4e4b9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/fb72968d53bcd7486e6f8853c4e4b9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7d5554434fdfcaf847f88afb1e6254/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Reading reference gene model ref_annot.bed ... Done
Loading SAM/BAM file ...  Total 200000 usable reads were sampled