File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/b9dae17c7844532d336425d61d3f7f/.command.log
Size
4.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (tih_rna_sample_00111_23H5VFLT4_s30)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/b9dae17c7844532d336425d61d3f7f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/392959925d0b521b862295add05c0e/tih_rna_sample_00111_23H5VFLT4_s30.FusionInspector.fusions.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/cytobands_hg38_GRCh38_v2.4.0.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/3cb4f22162cfdd0018680c5b92b124/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_annot.gtf
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/arriba/protein_domains_hg38_GRCh38_v2.4.0.gff3
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/b9dae17c7844532d336425d61d3f7f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7d5554434fdfcaf847f88afb1e6254/tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (8 inputs)

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: STX16:NPEPL1
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00111_23H5VFLT4_s30.Aligned.sortedByCoord.out.bam.bai
Done