Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/03644bbcccceb5ba8e7f58b481b18e/V4_0001_RNA_0005_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/9f63e3cb44db2d2a221f5f96df960d/V4_0001_RNA_0005_23H5VFLT4_s15.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/e9f65952c0b29e81e2205cc79c1015/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/e9f65952c0b29e81e2205cc79c1015/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory