Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam --OUTPUT HD789_0002_RNA_0008_23H5VFLT4_s19.md.bam --METRICS_FILE HD789_0002_RNA_0008_23H5VFLT4_s19.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:26:42.226 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:26:42 GMT 2026] MarkDuplicates --INPUT HD789_0002_RNA_0008_23H5VFLT4_s19.Aligned.sortedByCoord.out.bam --OUTPUT HD789_0002_RNA_0008_23H5VFLT4_s19.md.bam --METRICS_FILE HD789_0002_RNA_0008_23H5VFLT4_s19.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:26:42 GMT 2026] Executing as ?@nf-5c3869b5b040ac19e4585648c358fd9f-07652-qzq6z on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:26:42 MarkDuplicates Start of doWork freeMemory: 105829704; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:26:42 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:26:42 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:26:46 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,049,933
INFO 2026-06-08 08:26:46 MarkDuplicates Tracking 5796 as yet unmatched pairs. 3853 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,495,517
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 5116 as yet unmatched pairs. 1192 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:3,630,939
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 6025 as yet unmatched pairs. 403 records in RAM.
INFO 2026-06-08 08:26:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:8,013,413
INFO 2026-06-08 08:26:53 MarkDuplicates Tracking 11206 as yet unmatched pairs. 4013 records in RAM.
INFO 2026-06-08 08:26:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,871,992
INFO 2026-06-08 08:26:55 MarkDuplicates Tracking 8614 as yet unmatched pairs. 396 records in RAM.
INFO 2026-06-08 08:26:56 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:11,970,741
INFO 2026-06-08 08:26:56 MarkDuplicates Tracking 10231 as yet unmatched pairs. 649 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:16,133,201
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 12885 as yet unmatched pairs. 2233 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,105,728
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 12599 as yet unmatched pairs. 591 records in RAM.
INFO 2026-06-08 08:27:03 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:20,864,600
INFO 2026-06-08 08:27:03 MarkDuplicates Tracking 13854 as yet unmatched pairs. 812 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:23,083,208
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 15901 as yet unmatched pairs. 1583 records in RAM.
INFO 2026-06-08 08:27:06 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:25,900,991
INFO 2026-06-08 08:27:06 MarkDuplicates Tracking 18001 as yet unmatched pairs. 2711 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:27,113,953
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 16912 as yet unmatched pairs. 391 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:29,160,441
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 18664 as yet unmatched pairs. 838 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:32,192,682
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 19682 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:27:14 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:33,324,895
INFO 2026-06-08 08:27:14 MarkDuplicates Tracking 22903 as yet unmatched pairs. 2397 records in RAM.
INFO 2026-06-08 08:27:16 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:36,171,089
INFO 2026-06-08 08:27:16 MarkDuplicates Tracking 22399 as yet unmatched pairs. 551 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,380,340
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 23990 as yet unmatched pairs. 873 records in RAM.
INFO 2026-06-08 08:27:19 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:41,512,962
INFO 2026-06-08 08:27:19 MarkDuplicates Tracking 24354 as yet unmatched pairs. 158 records in RAM.
INFO 2026-06-08 08:27:21 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:43,598,022
INFO 2026-06-08 08:27:21 MarkDuplicates Tracking 28119 as yet unmatched pairs. 2594 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:45,515,804
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 32068 as yet unmatched pairs. 5373 records in RAM.
INFO 2026-06-08 08:27:24 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:51,445,024
INFO 2026-06-08 08:27:24 MarkDuplicates Tracking 28269 as yet unmatched pairs. 447 records in RAM.
INFO 2026-06-08 08:27:26 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:54,212,627
INFO 2026-06-08 08:27:26 MarkDuplicates Tracking 30389 as yet unmatched pairs. 1539 records in RAM.
INFO 2026-06-08 08:27:28 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:61,797,410
INFO 2026-06-08 08:27:28 MarkDuplicates Tracking 30992 as yet unmatched pairs. 711 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:70,262,831
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 31656 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:27:31 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:85,582,544
INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 35882 as yet unmatched pairs. 3654 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:93,589,167
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 35259 as yet unmatched pairs. 2101 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:108,947,249
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 34570 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:111,454,223
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 38013 as yet unmatched pairs. 2918 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:114,425,490
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 37491 as yet unmatched pairs. 1457 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:117,943,534
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 37696 as yet unmatched pairs. 688 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:120,501,132
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 38287 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:146,146,196
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 39021 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,430,988
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 41227 as yet unmatched pairs. 2015 records in RAM.
INFO 2026-06-08 08:27:48 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,236
INFO 2026-06-08 08:27:48 MarkDuplicates Tracking 41508 as yet unmatched pairs. 1321 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,294,311
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 41379 as yet unmatched pairs. 599 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:151,266,035
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 43953 as yet unmatched pairs. 2100 records in RAM.
INFO 2026-06-08 08:27:53 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:153,561,442
INFO 2026-06-08 08:27:53 MarkDuplicates Tracking 58879 as yet unmatched pairs. 16038 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:153,990,790
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 45640 as yet unmatched pairs. 1717 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,056
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 46744 as yet unmatched pairs. 1878 records in RAM.
INFO 2026-06-08 08:27:58 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:155,187,304
INFO 2026-06-08 08:27:58 MarkDuplicates Tracking 48898 as yet unmatched pairs. 2776 records in RAM.
INFO 2026-06-08 08:28:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:155,757,956
INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 47616 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:156,134,928
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 68569 as yet unmatched pairs. 19777 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,266,303
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 51178 as yet unmatched pairs. 748 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:157,073,721
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 51691 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:28:08 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:161,209,225
INFO 2026-06-08 08:28:08 MarkDuplicates Tracking 53984 as yet unmatched pairs. 1257 records in RAM.
INFO 2026-06-08 08:28:10 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:169,111,370
INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 58221 as yet unmatched pairs. 4490 records in RAM.
INFO 2026-06-08 08:28:11 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:175,000,108
INFO 2026-06-08 08:28:11 MarkDuplicates Tracking 56798 as yet unmatched pairs. 2295 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:180,873,898
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 56101 as yet unmatched pairs. 500 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:185,297,957
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 57000 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:193,016,268
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 58059 as yet unmatched pairs. 455 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:201,982,744
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 60282 as yet unmatched pairs. 1590 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:204,257,697
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 60511 as yet unmatched pairs. 753 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:207,337,347
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 65588 as yet unmatched pairs. 4665 records in RAM.
INFO 2026-06-08 08:28:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:211,669,114
INFO 2026-06-08 08:28:24 MarkDuplicates Tracking 62446 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:28:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:220,019,983
INFO 2026-06-08 08:28:26 MarkDuplicates Tracking 64038 as yet unmatched pairs. 1023 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:224,114,209
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 65938 as yet unmatched pairs. 1978 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:226,891,827
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 65459 as yet unmatched pairs. 473 records in RAM.
INFO 2026-06-08 08:28:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:229,499,721
INFO 2026-06-08 08:28:32 MarkDuplicates Tracking 67404 as yet unmatched pairs. 659 records in RAM.
INFO 2026-06-08 08:28:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:235,252,794
INFO 2026-06-08 08:28:34 MarkDuplicates Tracking 69218 as yet unmatched pairs. 816 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:244,856,049
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 70215 as yet unmatched pairs. 862 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:3,257,346
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 70803 as yet unmatched pairs. 67407 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:10,443,273
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 75055 as yet unmatched pairs. 71594 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:15,603,211
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 80445 as yet unmatched pairs. 76922 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,946
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 81340 as yet unmatched pairs. 77758 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:26,028,248
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 75320 as yet unmatched pairs. 71694 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:27,372,674
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 77583 as yet unmatched pairs. 73926 records in RAM.
INFO 2026-06-08 08:28:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:29,135,623
INFO 2026-06-08 08:28:48 MarkDuplicates Tracking 78625 as yet unmatched pairs. 74885 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,259
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 106014 as yet unmatched pairs. 72334 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,352
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 612202 as yet unmatched pairs. 35301 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,414
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 670119 as yet unmatched pairs. 31072 records in RAM.
INFO 2026-06-08 08:28:56 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:39,022,966
INFO 2026-06-08 08:28:56 MarkDuplicates Tracking 685146 as yet unmatched pairs. 29491 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:43,976,152
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 685821 as yet unmatched pairs. 30123 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:53,904,062
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 683947 as yet unmatched pairs. 28194 records in RAM.
INFO 2026-06-08 08:29:01 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:58,159,540
INFO 2026-06-08 08:29:01 MarkDuplicates Tracking 682732 as yet unmatched pairs. 26947 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:65,072,228
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 682098 as yet unmatched pairs. 26262 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:71,132,907
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 680562 as yet unmatched pairs. 24652 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:74,362,710
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 679854 as yet unmatched pairs. 23907 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:85,327,507
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 679134 as yet unmatched pairs. 23124 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:87,972,613
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 676982 as yet unmatched pairs. 20924 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:96,552,277
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 675960 as yet unmatched pairs. 19865 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:101,038,557
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 675346 as yet unmatched pairs. 19203 records in RAM.
INFO 2026-06-08 08:29:15 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:108,758,458
INFO 2026-06-08 08:29:15 MarkDuplicates Tracking 678220 as yet unmatched pairs. 22043 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:110,091,619
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 676313 as yet unmatched pairs. 20109 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,646,941
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 674933 as yet unmatched pairs. 18685 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:127,279,173
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 672461 as yet unmatched pairs. 16145 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:132,626,374
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 671006 as yet unmatched pairs. 14627 records in RAM.
INFO 2026-06-08 08:29:24 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:152,637,617
INFO 2026-06-08 08:29:24 MarkDuplicates Tracking 670537 as yet unmatched pairs. 14070 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:161,506,284
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 669317 as yet unmatched pairs. 12782 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:173,366,343
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 669060 as yet unmatched pairs. 12482 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:181,915,417
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 668239 as yet unmatched pairs. 11623 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:190,969,607
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 666661 as yet unmatched pairs. 9988 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:200,435,343
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 666679 as yet unmatched pairs. 9966 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:206,144,904
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 665996 as yet unmatched pairs. 9177 records in RAM.
INFO 2026-06-08 08:29:36 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,689
INFO 2026-06-08 08:29:36 MarkDuplicates Tracking 664893 as yet unmatched pairs. 8024 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:218,642,490
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 664182 as yet unmatched pairs. 7249 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:219,635,782
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 661851 as yet unmatched pairs. 4853 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:230,810,281
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 661924 as yet unmatched pairs. 4852 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:232,879,514
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 660073 as yet unmatched pairs. 2949 records in RAM.
INFO 2026-06-08 08:29:45 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:240,464,662
INFO 2026-06-08 08:29:45 MarkDuplicates Tracking 659672 as yet unmatched pairs. 2454 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:241,741,045
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 658086 as yet unmatched pairs. 799 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:10,063,886
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 656746 as yet unmatched pairs. 32988 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr3:13,386,311
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 656050 as yet unmatched pairs. 32250 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr3:23,962,494
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 655291 as yet unmatched pairs. 31406 records in RAM.
INFO 2026-06-08 08:29:54 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:33,825,232
INFO 2026-06-08 08:29:54 MarkDuplicates Tracking 653785 as yet unmatched pairs. 29828 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr3:39,412,046
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 655379 as yet unmatched pairs. 31350 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:45,083,681
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 651623 as yet unmatched pairs. 27554 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr3:47,419,630
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 651553 as yet unmatched pairs. 27453 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:48,576,994
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 649556 as yet unmatched pairs. 25405 records in RAM.
INFO 2026-06-08 08:30:02 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:49,030,440
INFO 2026-06-08 08:30:02 MarkDuplicates Tracking 648854 as yet unmatched pairs. 24665 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:49,699,522
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 647368 as yet unmatched pairs. 23140 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:51,397,076
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 645514 as yet unmatched pairs. 21237 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:52,550,589
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 645353 as yet unmatched pairs. 21027 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:57,584,392
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 644753 as yet unmatched pairs. 20373 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:65,356,788
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 642927 as yet unmatched pairs. 18473 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:98,593,145
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 642625 as yet unmatched pairs. 18073 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:101,849,600
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 641843 as yet unmatched pairs. 17269 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:113,915,708
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 640227 as yet unmatched pairs. 15581 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:123,948,754
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 640549 as yet unmatched pairs. 15869 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:128,055,735
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 640378 as yet unmatched pairs. 15637 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:129,578,360
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 637305 as yet unmatched pairs. 12528 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:136,151,852
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 636863 as yet unmatched pairs. 12039 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:143,033,314
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 636249 as yet unmatched pairs. 11353 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:152,310,394
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 634966 as yet unmatched pairs. 10034 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:160,432,327
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 633320 as yet unmatched pairs. 8322 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:179,218,252
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 633891 as yet unmatched pairs. 8831 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:184,182,977
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 633188 as yet unmatched pairs. 8089 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:184,381,564
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 630338 as yet unmatched pairs. 5195 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,766
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 632385 as yet unmatched pairs. 7194 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,402
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 629371 as yet unmatched pairs. 4137 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,115
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 640631 as yet unmatched pairs. 15373 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,369
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 640158 as yet unmatched pairs. 14877 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:195,785,250
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 641028 as yet unmatched pairs. 15731 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,258
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 628560 as yet unmatched pairs. 3239 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:197,027,795
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 626934 as yet unmatched pairs. 1577 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr4:1,225,461
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 625987 as yet unmatched pairs. 17890 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr4:1,935,253
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 624694 as yet unmatched pairs. 16548 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr4:3,524,940
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 622425 as yet unmatched pairs. 14224 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:13,595,923
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 620625 as yet unmatched pairs. 12380 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,548
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 623889 as yet unmatched pairs. 15338 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:39,917,137
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 620319 as yet unmatched pairs. 11717 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:55,369,829
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 618454 as yet unmatched pairs. 9783 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:73,078,839
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 617509 as yet unmatched pairs. 8776 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:76,949,806
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 617428 as yet unmatched pairs. 8640 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:82,928,046
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 615201 as yet unmatched pairs. 6355 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:99,081,375
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 615954 as yet unmatched pairs. 7023 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:109,959,351
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 613473 as yet unmatched pairs. 4488 records in RAM.
INFO 2026-06-08 08:31:07 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:127,938,824
INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 613023 as yet unmatched pairs. 3972 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr4:145,886,062
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 612004 as yet unmatched pairs. 2876 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:155,803,691
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 611174 as yet unmatched pairs. 1973 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr4:183,445,038
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 610260 as yet unmatched pairs. 1011 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:346,613
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 609231 as yet unmatched pairs. 31205 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr5:6,633,581
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 608440 as yet unmatched pairs. 30363 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:14,363,752
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 611292 as yet unmatched pairs. 33150 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:14,507,891
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 609947 as yet unmatched pairs. 31770 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:34,918,385
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 605619 as yet unmatched pairs. 27377 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:43,538,998
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 605246 as yet unmatched pairs. 26949 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:58,459,802
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 605228 as yet unmatched pairs. 26894 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:69,175,016
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 603882 as yet unmatched pairs. 25468 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:72,200,096
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 602097 as yet unmatched pairs. 23671 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr5:77,693,322
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 605007 as yet unmatched pairs. 26556 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr5:91,375,038
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 600210 as yet unmatched pairs. 21679 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:98,899,560
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 599237 as yet unmatched pairs. 20666 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:119,351,174
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 598263 as yet unmatched pairs. 19653 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:131,671,871
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 597681 as yet unmatched pairs. 19022 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:134,201,932
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 597784 as yet unmatched pairs. 19089 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:138,177,684
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 595052 as yet unmatched pairs. 16315 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:138,573,779
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 600535 as yet unmatched pairs. 21754 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr5:140,538,980
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 594261 as yet unmatched pairs. 15356 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:141,583,594
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 594333 as yet unmatched pairs. 15378 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:146,455,053
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 594360 as yet unmatched pairs. 15307 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,672
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 590452 as yet unmatched pairs. 11362 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:154,755,865
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 590818 as yet unmatched pairs. 11696 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:163,505,729
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 589146 as yet unmatched pairs. 9969 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,310
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 633371 as yet unmatched pairs. 54174 records in RAM.
INFO 2026-06-08 08:31:58 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,839
INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 609247 as yet unmatched pairs. 30036 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr5:173,616,205
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 587729 as yet unmatched pairs. 8453 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:177,337,176
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 586240 as yet unmatched pairs. 6900 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:178,210,584
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 587709 as yet unmatched pairs. 8322 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,820,926
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 606291 as yet unmatched pairs. 26878 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,455
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 593168 as yet unmatched pairs. 13736 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:181,239,529
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 590769 as yet unmatched pairs. 11274 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr6:7,189,231
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 580129 as yet unmatched pairs. 32944 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:13,307,615
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 578091 as yet unmatched pairs. 30857 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:25,600,504
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 576584 as yet unmatched pairs. 29272 records in RAM.
INFO 2026-06-08 08:32:16 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:26,216,565
INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 575574 as yet unmatched pairs. 28213 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,349
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 578573 as yet unmatched pairs. 31167 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,237
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 578536 as yet unmatched pairs. 31103 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:30,744,054
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 582371 as yet unmatched pairs. 34882 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,826
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 572944 as yet unmatched pairs. 25416 records in RAM.
INFO 2026-06-08 08:32:25 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr6:31,782,115
INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 572204 as yet unmatched pairs. 24640 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,899
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 571459 as yet unmatched pairs. 23871 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:32,848,761
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 569328 as yet unmatched pairs. 21724 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,416,602
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 570534 as yet unmatched pairs. 22916 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:34,244,843
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 572199 as yet unmatched pairs. 24549 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:36,598,907
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 567460 as yet unmatched pairs. 19756 records in RAM.
INFO 2026-06-08 08:32:35 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:42,929,531
INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 564592 as yet unmatched pairs. 16848 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:43,624,918
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 563306 as yet unmatched pairs. 15535 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:47,009,900
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 562656 as yet unmatched pairs. 14830 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:56,482,055
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 561967 as yet unmatched pairs. 14044 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:70,857,993
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 560489 as yet unmatched pairs. 12538 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:80,203,186
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 559480 as yet unmatched pairs. 11456 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:89,674,561
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 558962 as yet unmatched pairs. 10888 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,675
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 559863 as yet unmatched pairs. 11756 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:113,949,191
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 557651 as yet unmatched pairs. 9512 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:125,928,653
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 555576 as yet unmatched pairs. 7400 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:137,198,444
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 554830 as yet unmatched pairs. 6592 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:144,771,949
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 553926 as yet unmatched pairs. 5656 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:151,350,879
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 554233 as yet unmatched pairs. 5905 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr6:157,896,825
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 552036 as yet unmatched pairs. 3682 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:158,776,487
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 563147 as yet unmatched pairs. 14764 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:160,024,631
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 549729 as yet unmatched pairs. 1323 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:170,584,417
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 549149 as yet unmatched pairs. 678 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:2,225,419
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 547342 as yet unmatched pairs. 39632 records in RAM.
INFO 2026-06-08 08:33:05 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:5,313,232
INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 545871 as yet unmatched pairs. 38121 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,355
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 572069 as yet unmatched pairs. 64262 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:6,044,638
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 543635 as yet unmatched pairs. 35769 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:17,339,115
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 542635 as yet unmatched pairs. 34704 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,651
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 551691 as yet unmatched pairs. 43707 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:35,013,641
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 540685 as yet unmatched pairs. 32658 records in RAM.
INFO 2026-06-08 08:33:15 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:44,076,529
INFO 2026-06-08 08:33:15 MarkDuplicates Tracking 539015 as yet unmatched pairs. 30965 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:45,575,160
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 537740 as yet unmatched pairs. 29651 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:55,165,281
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 542881 as yet unmatched pairs. 34749 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:65,873,526
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 536685 as yet unmatched pairs. 28501 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,385
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 535480 as yet unmatched pairs. 27261 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:74,519,415
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 535195 as yet unmatched pairs. 26940 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:75,981,146
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 533634 as yet unmatched pairs. 25343 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr7:77,320,761
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 531853 as yet unmatched pairs. 23489 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:92,002,749
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 532096 as yet unmatched pairs. 23703 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:94,663,921
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 540407 as yet unmatched pairs. 31984 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:98,385,818
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 530613 as yet unmatched pairs. 22154 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:99,459,163
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 530799 as yet unmatched pairs. 22305 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,352,421
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 530506 as yet unmatched pairs. 21965 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,861,202
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 526966 as yet unmatched pairs. 18398 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,816,024
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 525030 as yet unmatched pairs. 16422 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:103,310,422
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 525620 as yet unmatched pairs. 16972 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:107,916,867
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 523949 as yet unmatched pairs. 15267 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:116,672,518
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 537402 as yet unmatched pairs. 28661 records in RAM.
INFO 2026-06-08 08:33:45 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:116,740,004
INFO 2026-06-08 08:33:45 MarkDuplicates Tracking 546038 as yet unmatched pairs. 37285 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:116,774,908
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 551854 as yet unmatched pairs. 43077 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:121,362,938
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 520310 as yet unmatched pairs. 11511 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,954
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 531164 as yet unmatched pairs. 22340 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:128,877,496
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 517353 as yet unmatched pairs. 8494 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:135,593,095
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 517585 as yet unmatched pairs. 8647 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:139,596,788
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 516594 as yet unmatched pairs. 7627 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:143,390,635
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 515152 as yet unmatched pairs. 6148 records in RAM.
INFO 2026-06-08 08:34:48 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 51s. Last read position: chr7:149,198,546
INFO 2026-06-08 08:34:48 MarkDuplicates Tracking 514354 as yet unmatched pairs. 5306 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr7:151,078,988
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 512454 as yet unmatched pairs. 3367 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr7:155,297,924
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 511307 as yet unmatched pairs. 2177 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr8:8,318,410
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 509134 as yet unmatched pairs. 34315 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr8:18,069,812
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 510277 as yet unmatched pairs. 35420 records in RAM.
INFO 2026-06-08 08:34:57 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr8:22,616,037
INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 507935 as yet unmatched pairs. 33046 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr8:26,578,259
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 506649 as yet unmatched pairs. 31711 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr8:37,871,585
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 505742 as yet unmatched pairs. 30773 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,111
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 503607 as yet unmatched pairs. 28603 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 1s. Last read position: chr8:47,858,870
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 504980 as yet unmatched pairs. 29939 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr8:55,799,041
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 502024 as yet unmatched pairs. 26945 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr8:63,186,192
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 503075 as yet unmatched pairs. 27954 records in RAM.
INFO 2026-06-08 08:35:08 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:73,322,719
INFO 2026-06-08 08:35:08 MarkDuplicates Tracking 500427 as yet unmatched pairs. 25266 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:93,791,285
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 499350 as yet unmatched pairs. 24141 records in RAM.
INFO 2026-06-08 08:35:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:98,041,834
INFO 2026-06-08 08:35:11 MarkDuplicates Tracking 506994 as yet unmatched pairs. 31760 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,154
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 509645 as yet unmatched pairs. 34380 records in RAM.
INFO 2026-06-08 08:35:15 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:103,325,097
INFO 2026-06-08 08:35:15 MarkDuplicates Tracking 497985 as yet unmatched pairs. 22686 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:118,067,555
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 496101 as yet unmatched pairs. 20763 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:124,332,724
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 495033 as yet unmatched pairs. 19647 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,248
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 503989 as yet unmatched pairs. 28533 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:129,849,326
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 493696 as yet unmatched pairs. 18190 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:141,138,008
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 492120 as yet unmatched pairs. 16528 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,253
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 500038 as yet unmatched pairs. 24400 records in RAM.
INFO 2026-06-08 08:35:27 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:143,813,047
INFO 2026-06-08 08:35:27 MarkDuplicates Tracking 490381 as yet unmatched pairs. 14703 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,250
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 486192 as yet unmatched pairs. 10500 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,920,133
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 490555 as yet unmatched pairs. 14853 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,927,724
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 488867 as yet unmatched pairs. 13129 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:144,059,599
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 481274 as yet unmatched pairs. 5503 records in RAM.
INFO 2026-06-08 08:35:34 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,321,345
INFO 2026-06-08 08:35:34 MarkDuplicates Tracking 479789 as yet unmatched pairs. 3979 records in RAM.
INFO 2026-06-08 08:35:36 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,515,807
INFO 2026-06-08 08:35:36 MarkDuplicates Tracking 478036 as yet unmatched pairs. 2188 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:5,462,833
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 476472 as yet unmatched pairs. 27720 records in RAM.
INFO 2026-06-08 08:35:39 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:15,459,760
INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 474682 as yet unmatched pairs. 25770 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,931
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 475780 as yet unmatched pairs. 26820 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,086,189
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 472428 as yet unmatched pairs. 23444 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr9:36,633,174
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 472256 as yet unmatched pairs. 23214 records in RAM.
INFO 2026-06-08 08:35:46 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:69,229,203
INFO 2026-06-08 08:35:46 MarkDuplicates Tracking 470557 as yet unmatched pairs. 21481 records in RAM.
INFO 2026-06-08 08:35:48 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:83,683,018
INFO 2026-06-08 08:35:48 MarkDuplicates Tracking 470635 as yet unmatched pairs. 21523 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr9:92,253,377
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 471439 as yet unmatched pairs. 22289 records in RAM.
INFO 2026-06-08 08:35:52 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:95,881,045
INFO 2026-06-08 08:35:52 MarkDuplicates Tracking 467746 as yet unmatched pairs. 18564 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:104,132,041
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 466547 as yet unmatched pairs. 17328 records in RAM.
INFO 2026-06-08 08:35:55 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:111,440,430
INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 465626 as yet unmatched pairs. 16349 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr9:120,460,652
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 464574 as yet unmatched pairs. 15254 records in RAM.
INFO 2026-06-08 08:35:59 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:125,207,689
INFO 2026-06-08 08:35:59 MarkDuplicates Tracking 463740 as yet unmatched pairs. 14387 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:127,751,205
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 462268 as yet unmatched pairs. 12879 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,494,495
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 461164 as yet unmatched pairs. 11724 records in RAM.
INFO 2026-06-08 08:36:04 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:129,002,938
INFO 2026-06-08 08:36:04 MarkDuplicates Tracking 460605 as yet unmatched pairs. 11146 records in RAM.
INFO 2026-06-08 08:36:06 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:130,874,909
INFO 2026-06-08 08:36:06 MarkDuplicates Tracking 462295 as yet unmatched pairs. 12797 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:132,400,206
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 457372 as yet unmatched pairs. 7838 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:134,053,266
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 458244 as yet unmatched pairs. 8675 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,189
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 458011 as yet unmatched pairs. 8413 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:137,013,548
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 454662 as yet unmatched pairs. 5023 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:137,243,333
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 453013 as yet unmatched pairs. 3343 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr10:3,116,816
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 450422 as yet unmatched pairs. 21959 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:11,525,391
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 448658 as yet unmatched pairs. 20164 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr10:24,545,955
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 447492 as yet unmatched pairs. 18974 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr10:31,839,304
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 446850 as yet unmatched pairs. 18311 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:32,958,060
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 445692 as yet unmatched pairs. 17140 records in RAM.
INFO 2026-06-08 08:36:26 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:46,010,655
INFO 2026-06-08 08:36:26 MarkDuplicates Tracking 449121 as yet unmatched pairs. 20525 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr10:50,679,543
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 444113 as yet unmatched pairs. 15496 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:68,419,805
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 443399 as yet unmatched pairs. 14764 records in RAM.
INFO 2026-06-08 08:36:31 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr10:71,831,903
INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 444150 as yet unmatched pairs. 15484 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr10:73,860,830
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 441209 as yet unmatched pairs. 12503 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:78,022,277
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 439955 as yet unmatched pairs. 11216 records in RAM.
INFO 2026-06-08 08:36:36 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:87,094,358
INFO 2026-06-08 08:36:36 MarkDuplicates Tracking 442385 as yet unmatched pairs. 13620 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:93,343,882
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 440417 as yet unmatched pairs. 11624 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:97,365,785
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 437023 as yet unmatched pairs. 8206 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:100,222,866
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 436391 as yet unmatched pairs. 7539 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:102,139,499
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 436456 as yet unmatched pairs. 7586 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:103,416,729
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 433958 as yet unmatched pairs. 5055 records in RAM.
INFO 2026-06-08 08:36:47 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:112,409,566
INFO 2026-06-08 08:36:47 MarkDuplicates Tracking 432897 as yet unmatched pairs. 3978 records in RAM.
INFO 2026-06-08 08:36:49 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:119,169,295
INFO 2026-06-08 08:36:49 MarkDuplicates Tracking 433822 as yet unmatched pairs. 4860 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:124,834,649
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 430732 as yet unmatched pairs. 1741 records in RAM.
INFO 2026-06-08 08:36:52 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:131,901,249
INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 430016 as yet unmatched pairs. 961 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 2s. Last read position: chr11:400,343
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 429658 as yet unmatched pairs. 47922 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr11:802,314
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 426862 as yet unmatched pairs. 45098 records in RAM.
INFO 2026-06-08 08:36:58 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,836,797
INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 426723 as yet unmatched pairs. 44926 records in RAM.
INFO 2026-06-08 08:37:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:5,441,322
INFO 2026-06-08 08:37:00 MarkDuplicates Tracking 423724 as yet unmatched pairs. 41887 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:9,417,121
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 425292 as yet unmatched pairs. 43419 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 2s. Last read position: chr11:12,902,052
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 421790 as yet unmatched pairs. 39880 records in RAM.
INFO 2026-06-08 08:37:05 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:18,615,067
INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 420749 as yet unmatched pairs. 38805 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:33,574,785
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 419551 as yet unmatched pairs. 37588 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:44,171,618
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 419864 as yet unmatched pairs. 37856 records in RAM.
INFO 2026-06-08 08:37:11 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:47,234,609
INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 417904 as yet unmatched pairs. 35859 records in RAM.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr11:57,332,249
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 418683 as yet unmatched pairs. 36616 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:60,842,446
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 416673 as yet unmatched pairs. 34584 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:61,812,536
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 415854 as yet unmatched pairs. 33707 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,776
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 414842 as yet unmatched pairs. 32672 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:62,633,039
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 418522 as yet unmatched pairs. 36303 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr11:63,681,634
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 413030 as yet unmatched pairs. 30788 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:64,270,010
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 410321 as yet unmatched pairs. 28059 records in RAM.
INFO 2026-06-08 08:37:25 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,041,551
INFO 2026-06-08 08:37:25 MarkDuplicates Tracking 408901 as yet unmatched pairs. 26606 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr11:65,443,808
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 406974 as yet unmatched pairs. 24598 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:65,624,341
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 405954 as yet unmatched pairs. 23518 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:65,891,178
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 412542 as yet unmatched pairs. 30085 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:66,243,342
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 401765 as yet unmatched pairs. 19294 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:66,699,578
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 402179 as yet unmatched pairs. 19680 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 2s. Last read position: chr11:67,438,798
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 401105 as yet unmatched pairs. 18581 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:68,365,617
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 399344 as yet unmatched pairs. 16795 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:69,654,247
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 397269 as yet unmatched pairs. 14685 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:72,225,062
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 396418 as yet unmatched pairs. 13785 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:74,969,566
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 394523 as yet unmatched pairs. 11872 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:78,210,334
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 392634 as yet unmatched pairs. 9968 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:93,736,174
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 392343 as yet unmatched pairs. 9639 records in RAM.
INFO 2026-06-08 08:37:49 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:102,223,741
INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 398276 as yet unmatched pairs. 15541 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:110,165,102
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 390215 as yet unmatched pairs. 7459 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 2s. Last read position: chr11:117,228,314
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 389401 as yet unmatched pairs. 6616 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:118,896,353
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 389236 as yet unmatched pairs. 6436 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:119,111,092
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 386676 as yet unmatched pairs. 3849 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,769
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 394691 as yet unmatched pairs. 11830 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:128,968,905
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 385170 as yet unmatched pairs. 2281 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr11:130,473,594
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 383587 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr12:2,795,206
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 384514 as yet unmatched pairs. 38329 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:6,452,164
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 381564 as yet unmatched pairs. 35342 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr12:6,828,038
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 380219 as yet unmatched pairs. 33965 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:8,941,875
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 380120 as yet unmatched pairs. 33851 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:12,909,047
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 386843 as yet unmatched pairs. 40534 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:21,638,370
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 380085 as yet unmatched pairs. 33743 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:31,093,244
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 377042 as yet unmatched pairs. 30665 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr12:46,196,105
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 376621 as yet unmatched pairs. 30212 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr12:48,939,024
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 376886 as yet unmatched pairs. 30457 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr12:49,269,962
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 377780 as yet unmatched pairs. 31338 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr12:50,809,525
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 374693 as yet unmatched pairs. 28230 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr12:52,245,492
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 388110 as yet unmatched pairs. 41595 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:52,900,024
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 374044 as yet unmatched pairs. 27511 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr12:53,301,718
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 369806 as yet unmatched pairs. 23253 records in RAM.
INFO 2026-06-08 08:38:33 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,212
INFO 2026-06-08 08:38:33 MarkDuplicates Tracking 376600 as yet unmatched pairs. 30011 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:56,101,088
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 367897 as yet unmatched pairs. 21278 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr12:56,430,933
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 366867 as yet unmatched pairs. 20242 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr12:57,091,721
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 366571 as yet unmatched pairs. 19926 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,488,138
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 369022 as yet unmatched pairs. 22355 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:64,108,953
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 363295 as yet unmatched pairs. 16604 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,782
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 363312 as yet unmatched pairs. 16592 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:76,053,235
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 363558 as yet unmatched pairs. 16796 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:92,857,308
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 360695 as yet unmatched pairs. 13913 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:98,597,920
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 366539 as yet unmatched pairs. 19742 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr12:104,318,923
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 361165 as yet unmatched pairs. 14357 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:109,088,443
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 358211 as yet unmatched pairs. 11370 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:111,418,822
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 357594 as yet unmatched pairs. 10729 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:112,965,939
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 356349 as yet unmatched pairs. 9454 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:119,130,667
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 354474 as yet unmatched pairs. 7473 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr12:120,224,211
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 353493 as yet unmatched pairs. 6454 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:121,902,955
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 353582 as yet unmatched pairs. 6528 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:123,350,440
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 350901 as yet unmatched pairs. 3819 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:124,980,707
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 349992 as yet unmatched pairs. 2877 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr12:132,509,696
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 350446 as yet unmatched pairs. 3323 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,265
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 350013 as yet unmatched pairs. 10164 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr13:26,218,513
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 346434 as yet unmatched pairs. 6562 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr13:37,024,114
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 345216 as yet unmatched pairs. 5320 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:46,158,851
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 345675 as yet unmatched pairs. 5743 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr13:75,310,105
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 343446 as yet unmatched pairs. 3491 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:98,010,184
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 343285 as yet unmatched pairs. 3300 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:110,689,351
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 342003 as yet unmatched pairs. 1995 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:20,395,909
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 340227 as yet unmatched pairs. 23505 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr14:22,770,404
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 339887 as yet unmatched pairs. 23154 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:23,645,194
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 337704 as yet unmatched pairs. 20961 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:24,432,525
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 336774 as yet unmatched pairs. 20006 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:35,310,764
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 337383 as yet unmatched pairs. 20599 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,592
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 376761 as yet unmatched pairs. 59941 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,575
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 345747 as yet unmatched pairs. 28878 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:51,254,447
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 333036 as yet unmatched pairs. 16124 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:55,619,225
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 332956 as yet unmatched pairs. 16012 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:61,727,633
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 332910 as yet unmatched pairs. 15947 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:64,795,537
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 330176 as yet unmatched pairs. 13191 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr14:69,054,578
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 329082 as yet unmatched pairs. 12058 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:73,739,341
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 328257 as yet unmatched pairs. 11212 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:75,281,294
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 328678 as yet unmatched pairs. 11622 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:90,278,393
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 325772 as yet unmatched pairs. 8696 records in RAM.
INFO 2026-06-08 08:39:50 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr14:94,619,261
INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 324993 as yet unmatched pairs. 7901 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr14:101,983,430
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 324699 as yet unmatched pairs. 7566 records in RAM.
INFO 2026-06-08 08:39:53 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:102,086,187
INFO 2026-06-08 08:39:53 MarkDuplicates Tracking 326707 as yet unmatched pairs. 9569 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:103,677,448
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 322768 as yet unmatched pairs. 5600 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr14:104,940,632
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 320525 as yet unmatched pairs. 3325 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr14:105,249,393
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 319512 as yet unmatched pairs. 2292 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr15:25,720,779
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 316978 as yet unmatched pairs. 18958 records in RAM.
INFO 2026-06-08 08:40:03 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr15:32,968,925
INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 315783 as yet unmatched pairs. 17746 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:40,337,418
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 314923 as yet unmatched pairs. 16863 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr15:41,710,943
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 315474 as yet unmatched pairs. 17410 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:43,521,787
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 312588 as yet unmatched pairs. 14507 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:44,554,600
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 312750 as yet unmatched pairs. 14658 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:51,481,157
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 311017 as yet unmatched pairs. 12898 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr15:57,251,393
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 315072 as yet unmatched pairs. 16937 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:61,950,363
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 309348 as yet unmatched pairs. 11202 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:65,286,291
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 308065 as yet unmatched pairs. 9913 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr15:68,209,669
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 308821 as yet unmatched pairs. 10649 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr15:72,210,440
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 312541 as yet unmatched pairs. 14332 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr15:74,655,834
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 304826 as yet unmatched pairs. 6604 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:76,804,599
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 303446 as yet unmatched pairs. 5207 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,388
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 302829 as yet unmatched pairs. 4577 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:89,155,508
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 301516 as yet unmatched pairs. 3238 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:90,483,390
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 301005 as yet unmatched pairs. 2713 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:100,887,680
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 301018 as yet unmatched pairs. 2707 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr16:547,415
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 299775 as yet unmatched pairs. 44545 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:789,310
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 296017 as yet unmatched pairs. 40769 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr16:1,788,189
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 295292 as yet unmatched pairs. 40034 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,116,056
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 291926 as yet unmatched pairs. 36660 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,593
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 291360 as yet unmatched pairs. 36077 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:2,976,885
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 289700 as yet unmatched pairs. 34392 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr16:4,114,982
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 287512 as yet unmatched pairs. 32194 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr16:8,900,525
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 286598 as yet unmatched pairs. 31265 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:14,644,426
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 285603 as yet unmatched pairs. 30257 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:15,600,527
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 283914 as yet unmatched pairs. 28557 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:16,364,593
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 283243 as yet unmatched pairs. 27878 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:18,549,609
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 283889 as yet unmatched pairs. 28518 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,230
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 283637 as yet unmatched pairs. 28260 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:22,315,119
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 282314 as yet unmatched pairs. 26926 records in RAM.
INFO 2026-06-08 08:41:00 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:23,683,993
INFO 2026-06-08 08:41:00 MarkDuplicates Tracking 281437 as yet unmatched pairs. 26038 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,392,072
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 279651 as yet unmatched pairs. 24241 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:28,975,205
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 280374 as yet unmatched pairs. 24947 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,808,648
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 280806 as yet unmatched pairs. 25369 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,116,671
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 276928 as yet unmatched pairs. 21474 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:30,667,420
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 275148 as yet unmatched pairs. 19685 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,726
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 273966 as yet unmatched pairs. 18490 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr16:34,267,629
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 272523 as yet unmatched pairs. 17043 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:53,470,426
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 272764 as yet unmatched pairs. 17253 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:56,625,795
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 272774 as yet unmatched pairs. 17251 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:58,020,174
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 269791 as yet unmatched pairs. 14259 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr16:67,029,468
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 268850 as yet unmatched pairs. 13308 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:67,909,071
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 266692 as yet unmatched pairs. 11129 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:69,330,971
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 265614 as yet unmatched pairs. 10041 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:70,503,503
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 264489 as yet unmatched pairs. 8902 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:74,465,684
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 263782 as yet unmatched pairs. 8178 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:81,936,364
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 261992 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:87,412,131
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 260880 as yet unmatched pairs. 5256 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:88,721,269
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 260440 as yet unmatched pairs. 4790 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 2s. Last read position: chr16:89,552,686
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 258142 as yet unmatched pairs. 2472 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:89,935,455
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 257011 as yet unmatched pairs. 1318 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr17:1,365,031
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 262245 as yet unmatched pairs. 63542 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:2,042,151
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 255206 as yet unmatched pairs. 56485 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:4,539,255
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 252537 as yet unmatched pairs. 53809 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:5,022,235
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 252611 as yet unmatched pairs. 53877 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:7,259,482
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 250439 as yet unmatched pairs. 51688 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:7,574,616
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 255979 as yet unmatched pairs. 57225 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:8,140,981
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 248051 as yet unmatched pairs. 49284 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:15,945,407
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 248452 as yet unmatched pairs. 49666 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:17,477,135
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 245614 as yet unmatched pairs. 46822 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:18,274,824
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 244014 as yet unmatched pairs. 45208 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:27,561,594
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 242512 as yet unmatched pairs. 43695 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr17:28,726,003
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 241860 as yet unmatched pairs. 43036 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:30,422,838
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 241011 as yet unmatched pairs. 42174 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:32,369,626
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 240984 as yet unmatched pairs. 42138 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:35,824,171
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 240734 as yet unmatched pairs. 41881 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr17:37,449,726
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 237425 as yet unmatched pairs. 38560 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,153
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 245107 as yet unmatched pairs. 46239 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,422
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 243288 as yet unmatched pairs. 44396 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 141s. Last read position: chr17:40,168,406
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 233860 as yet unmatched pairs. 34964 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 2s. Last read position: chr17:41,524,519
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 234484 as yet unmatched pairs. 35578 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr17:41,867,800
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 233157 as yet unmatched pairs. 34245 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr17:42,565,286
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 230357 as yet unmatched pairs. 31436 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 2s. Last read position: chr17:43,490,422
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 229141 as yet unmatched pairs. 30205 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr17:44,354,961
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 227731 as yet unmatched pairs. 28781 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 2s. Last read position: chr17:45,585,873
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 226241 as yet unmatched pairs. 27286 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:47,676,431
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 226763 as yet unmatched pairs. 27804 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:49,788,807
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 224826 as yet unmatched pairs. 25851 records in RAM.
INFO 2026-06-08 08:44:50 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,634,877
INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 223744 as yet unmatched pairs. 24756 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:56,950,456
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 222151 as yet unmatched pairs. 23151 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr17:59,647,399
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 233672 as yet unmatched pairs. 34664 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr17:59,682,932
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 229079 as yet unmatched pairs. 30066 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 2s. Last read position: chr17:62,426,413
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 219744 as yet unmatched pairs. 20725 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 3s. Last read position: chr17:64,502,829
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 219790 as yet unmatched pairs. 20753 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 2s. Last read position: chr17:67,946,278
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 217544 as yet unmatched pairs. 18479 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 2s. Last read position: chr17:74,203,731
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 221167 as yet unmatched pairs. 22086 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:75,502,896
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 215114 as yet unmatched pairs. 16018 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 2s. Last read position: chr17:75,758,276
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 213530 as yet unmatched pairs. 14423 records in RAM.
INFO 2026-06-08 08:45:14 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr17:76,328,742
INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 212116 as yet unmatched pairs. 12997 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr17:78,122,630
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 210566 as yet unmatched pairs. 11439 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,338
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 209264 as yet unmatched pairs. 10118 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:80,945,679
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 207494 as yet unmatched pairs. 8334 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:81,547,269
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 206567 as yet unmatched pairs. 7370 records in RAM.
INFO 2026-06-08 08:45:24 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 2s. Last read position: chr17:81,860,387
INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 205288 as yet unmatched pairs. 6086 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,061,666
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 204936 as yet unmatched pairs. 5719 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:82,195,322
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 201017 as yet unmatched pairs. 1785 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr18:210,436
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 199964 as yet unmatched pairs. 8697 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr18:9,936,995
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 200832 as yet unmatched pairs. 9550 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr18:23,536,729
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 197660 as yet unmatched pairs. 6366 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr18:31,466,651
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 196455 as yet unmatched pairs. 5143 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr18:45,939,606
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 195496 as yet unmatched pairs. 4170 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr18:54,224,316
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 194092 as yet unmatched pairs. 2743 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr18:62,765,909
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 193753 as yet unmatched pairs. 2386 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr18:80,045,908
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 191603 as yet unmatched pairs. 209 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr19:757,180
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 190220 as yet unmatched pairs. 70773 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 3s. Last read position: chr19:1,043,425
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 188410 as yet unmatched pairs. 68953 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 3s. Last read position: chr19:1,254,971
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 188136 as yet unmatched pairs. 68674 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 2s. Last read position: chr19:1,556,143
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 187574 as yet unmatched pairs. 68111 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 2s. Last read position: chr19:2,042,488
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 184721 as yet unmatched pairs. 65252 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr19:2,352,950
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 181500 as yet unmatched pairs. 62031 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:3,531,728
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 180508 as yet unmatched pairs. 61029 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr19:4,423,789
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 177730 as yet unmatched pairs. 58239 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr19:5,215,536
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 177069 as yet unmatched pairs. 57569 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr19:6,368,739
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 174376 as yet unmatched pairs. 54864 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr19:7,606,539
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 173502 as yet unmatched pairs. 53981 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:8,848,931
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 171471 as yet unmatched pairs. 51938 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:9,380,690
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 170487 as yet unmatched pairs. 50942 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr19:10,356,650
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 169907 as yet unmatched pairs. 50360 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chr19:10,987,755
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 169308 as yet unmatched pairs. 49739 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:11,514,089
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 167844 as yet unmatched pairs. 48268 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr19:12,930,311
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 166487 as yet unmatched pairs. 46892 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr19:14,024,702
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 163263 as yet unmatched pairs. 43661 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,770
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 178279 as yet unmatched pairs. 58673 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,500
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 164363 as yet unmatched pairs. 44755 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr19:17,197,794
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 159928 as yet unmatched pairs. 40307 records in RAM.
INFO 2026-06-08 08:46:37 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 2s. Last read position: chr19:18,155,821
INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 157699 as yet unmatched pairs. 38063 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr19:18,852,283
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 155873 as yet unmatched pairs. 36225 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr19:23,361,642
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 153994 as yet unmatched pairs. 34342 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr19:34,428,555
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 154719 as yet unmatched pairs. 35060 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 1s. Last read position: chr19:35,722,431
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 151552 as yet unmatched pairs. 31883 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:38,283,752
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 151949 as yet unmatched pairs. 32268 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 2s. Last read position: chr19:38,879,226
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 149031 as yet unmatched pairs. 29343 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:39,474,281
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 147827 as yet unmatched pairs. 28138 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:40,597,298
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 146984 as yet unmatched pairs. 27288 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr19:41,301,661
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 144752 as yet unmatched pairs. 25048 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 2s. Last read position: chr19:42,249,632
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 144319 as yet unmatched pairs. 24613 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:43,554,784
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 141856 as yet unmatched pairs. 22144 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:45,069,203
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 140454 as yet unmatched pairs. 20735 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr19:45,765,557
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 138475 as yet unmatched pairs. 18750 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr19:46,787,990
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 137528 as yet unmatched pairs. 17795 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr19:48,325,575
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 135050 as yet unmatched pairs. 15310 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 2s. Last read position: chr19:48,965,439
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 135232 as yet unmatched pairs. 15490 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,557,117
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 133809 as yet unmatched pairs. 14062 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:49,854,667
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 133277 as yet unmatched pairs. 13522 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr19:50,668,771
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 129109 as yet unmatched pairs. 9350 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr19:53,578,245
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 127028 as yet unmatched pairs. 7268 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:54,983,118
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 125732 as yet unmatched pairs. 5958 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr19:55,406,884
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 127294 as yet unmatched pairs. 7508 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr19:57,280,631
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 122522 as yet unmatched pairs. 2731 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:58,549,349
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 124302 as yet unmatched pairs. 4508 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr20:2,103,313
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 120098 as yet unmatched pairs. 19746 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 2s. Last read position: chr20:3,820,669
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 117305 as yet unmatched pairs. 16949 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr20:17,601,041
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 118507 as yet unmatched pairs. 18139 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr20:24,963,768
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 115390 as yet unmatched pairs. 15014 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr20:32,309,976
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 114397 as yet unmatched pairs. 14018 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:34,768,548
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 112672 as yet unmatched pairs. 12293 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:35,842,606
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 111519 as yet unmatched pairs. 11137 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr20:38,558,401
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 110563 as yet unmatched pairs. 10176 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr20:44,907,429
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 109020 as yet unmatched pairs. 8623 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:46,354,913
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 109046 as yet unmatched pairs. 8643 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,252
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 108671 as yet unmatched pairs. 8263 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr20:58,891,776
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 114786 as yet unmatched pairs. 14376 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr20:62,322,292
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 105366 as yet unmatched pairs. 4951 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr20:63,203,203
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 103756 as yet unmatched pairs. 3335 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr20:63,939,912
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 101004 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr21:8,208,739
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 100058 as yet unmatched pairs. 24685 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,863
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 101626 as yet unmatched pairs. 26241 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr21:8,257,590
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 94308 as yet unmatched pairs. 18923 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr21:8,396,194
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 93041 as yet unmatched pairs. 17653 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,331
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 91108 as yet unmatched pairs. 15719 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,258
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 90744 as yet unmatched pairs. 15355 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,987,460
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 84249 as yet unmatched pairs. 8860 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr21:31,685,598
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 81197 as yet unmatched pairs. 5806 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 2s. Last read position: chr21:34,518,299
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 80231 as yet unmatched pairs. 4837 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr21:41,756,546
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 79550 as yet unmatched pairs. 4153 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 2s. Last read position: chr21:44,140,267
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 77695 as yet unmatched pairs. 2298 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr21:46,334,541
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 76985 as yet unmatched pairs. 1582 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr22:19,433,281
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 74883 as yet unmatched pairs. 19777 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr22:21,487,565
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 73150 as yet unmatched pairs. 18044 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:23,825,340
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 72039 as yet unmatched pairs. 16929 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr22:29,049,744
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 70376 as yet unmatched pairs. 15265 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:29,300,145
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 69737 as yet unmatched pairs. 14625 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:31,090,978
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 68182 as yet unmatched pairs. 13068 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr22:36,282,746
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 67337 as yet unmatched pairs. 12221 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr22:37,655,570
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 64608 as yet unmatched pairs. 9490 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr22:38,699,821
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 63308 as yet unmatched pairs. 8190 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 1s. Last read position: chr22:40,607,860
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 61685 as yet unmatched pairs. 6567 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr22:41,866,999
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 61675 as yet unmatched pairs. 6556 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr22:43,989,728
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 59506 as yet unmatched pairs. 4383 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr22:50,189,699
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 59115 as yet unmatched pairs. 3983 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr22:50,517,435
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 57147 as yet unmatched pairs. 2010 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chrX:11,759,862
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 54401 as yet unmatched pairs. 16132 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chrX:23,837,199
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 53434 as yet unmatched pairs. 15154 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chrX:41,184,401
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 53447 as yet unmatched pairs. 15167 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:47,240,804
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 52123 as yet unmatched pairs. 13841 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 2s. Last read position: chrX:49,067,933
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 50518 as yet unmatched pairs. 12235 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chrX:53,560,267
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 49912 as yet unmatched pairs. 11628 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 1s. Last read position: chrX:70,289,269
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 48167 as yet unmatched pairs. 9883 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:72,275,680
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 48173 as yet unmatched pairs. 9889 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:100,666,865
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 46793 as yet unmatched pairs. 8509 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chrX:118,392,988
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 45453 as yet unmatched pairs. 7169 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 2s. Last read position: chrX:130,013,319
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 44621 as yet unmatched pairs. 6336 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chrX:149,483,205
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 45455 as yet unmatched pairs. 7169 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,548
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 43714 as yet unmatched pairs. 5428 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chrX:154,359,530
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 44708 as yet unmatched pairs. 6422 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chrX:154,462,124
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 39707 as yet unmatched pairs. 1421 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chrM:1,791
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 38178 as yet unmatched pairs. 479 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 1s. Last read position: GL000220.1:108,620
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 36946 as yet unmatched pairs. 1596 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,310
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 35488 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: GL000220.1:156,566
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 35474 as yet unmatched pairs. 124 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: GL000220.1:160,595
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 35355 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: KI270733.1:129,596
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 35197 as yet unmatched pairs. 35178 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,205
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 33329 as yet unmatched pairs. 33310 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:174,533
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 31201 as yet unmatched pairs. 31182 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,202
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 51 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 635425734 records. 0 pairs never matched.
INFO 2026-06-08 08:50:41 MarkDuplicates After buildSortedReadEndLists freeMemory: 204138128; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:50:41 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:50:42 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:50:42 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,541
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder Large duplicate set. size = 2952
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,702
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,286
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder Large duplicate set. size = 3236
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,441
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,641
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,117
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder Large duplicate set. size = 4156
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,901
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,229
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,927
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,782
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder Large duplicate set. size = 2336
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,650
INFO 2026-06-08 08:50:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,650
INFO 2026-06-08 08:51:09 OpticalDuplicateFinder Large duplicate set. size = 1125
INFO 2026-06-08 08:51:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,906
INFO 2026-06-08 08:51:21 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:51:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,735
INFO 2026-06-08 08:51:21 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 08:51:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,881
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,620
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1199
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,105
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,286
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1837
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,026
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 2347
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,319
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,424
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 2085
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,946
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,396
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,103
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 2024
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,407
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,652
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,152
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 2345
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,007
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,271
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1665
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,805
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1781
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,172
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,179
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,395
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:51:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,052
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,882
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,722
INFO 2026-06-08 08:52:00 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 08:52:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,455
INFO 2026-06-08 08:52:00 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:52:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,382
INFO 2026-06-08 08:52:25 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:52:25 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:53:35 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:53:35 MarkDuplicates After generateDuplicateIndexes freeMemory: 203982888; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:53:35 MarkDuplicates Marking 269421457 records as duplicates.
INFO 2026-06-08 08:53:35 MarkDuplicates Found 45403828 optical duplicate clusters.
INFO 2026-06-08 08:53:35 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:53:55 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:20s. Time for last 10,000,000: 20s. Last read position: chr1:23,083,208
INFO 2026-06-08 08:54:14 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:39s. Time for last 10,000,000: 19s. Last read position: chr1:45,515,804
INFO 2026-06-08 08:54:34 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:58s. Time for last 10,000,000: 19s. Last read position: chr1:117,943,534
INFO 2026-06-08 08:54:54 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:19s. Time for last 10,000,000: 20s. Last read position: chr1:155,187,304
INFO 2026-06-08 08:55:14 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:39s. Time for last 10,000,000: 20s. Last read position: chr1:193,016,268
INFO 2026-06-08 08:55:35 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 20s. Last read position: chr1:244,856,049
INFO 2026-06-08 08:55:55 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 20s. Last read position: chr2:32,916,414
INFO 2026-06-08 08:56:19 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 23s. Last read position: chr2:96,552,277
INFO 2026-06-08 08:56:48 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 29s. Last read position: chr2:181,915,417
INFO 2026-06-08 08:57:17 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 29s. Last read position: chr2:241,741,045
INFO 2026-06-08 08:57:44 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:04:08s. Time for last 10,000,000: 26s. Last read position: chr3:49,699,522
INFO 2026-06-08 08:58:09 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 25s. Last read position: chr3:129,578,360
INFO 2026-06-08 08:58:33 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:04:57s. Time for last 10,000,000: 23s. Last read position: chr3:195,780,115
INFO 2026-06-08 08:58:54 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 21s. Last read position: chr4:39,917,137
INFO 2026-06-08 08:59:15 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 20s. Last read position: chr4:183,445,038
INFO 2026-06-08 08:59:37 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 22s. Last read position: chr5:77,693,322
INFO 2026-06-08 08:59:56 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 18s. Last read position: chr5:146,455,053
INFO 2026-06-08 09:00:15 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 18s. Last read position: chr5:179,836,455
INFO 2026-06-08 09:00:32 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 17s. Last read position: chr6:31,782,115
INFO 2026-06-08 09:00:51 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 18s. Last read position: chr6:70,857,993
INFO 2026-06-08 09:01:10 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 18s. Last read position: chr6:158,776,487
INFO 2026-06-08 09:01:28 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 18s. Last read position: chr7:44,076,529
INFO 2026-06-08 09:01:46 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 18s. Last read position: chr7:98,385,818
INFO 2026-06-08 09:02:03 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:08:28s. Time for last 10,000,000: 17s. Last read position: chr7:121,362,938
INFO 2026-06-08 09:02:22 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 18s. Last read position: chr8:18,069,812
INFO 2026-06-08 09:02:41 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 18s. Last read position: chr8:98,041,834
INFO 2026-06-08 09:02:59 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 17s. Last read position: chr8:143,865,250
INFO 2026-06-08 09:03:16 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:09:41s. Time for last 10,000,000: 17s. Last read position: chr9:36,633,174
INFO 2026-06-08 09:03:34 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 17s. Last read position: chr9:128,494,495
INFO 2026-06-08 09:03:51 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 17s. Last read position: chr10:24,545,955
INFO 2026-06-08 09:04:09 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 17s. Last read position: chr10:93,343,882
INFO 2026-06-08 09:04:26 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:10:50s. Time for last 10,000,000: 17s. Last read position: chr11:802,314
INFO 2026-06-08 09:04:43 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 17s. Last read position: chr11:60,842,446
INFO 2026-06-08 09:05:00 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 17s. Last read position: chr11:66,243,342
INFO 2026-06-08 09:05:18 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 17s. Last read position: chr11:110,165,102
INFO 2026-06-08 09:05:34 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:11:59s. Time for last 10,000,000: 16s. Last read position: chr12:8,941,875
INFO 2026-06-08 09:05:51 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 16s. Last read position: chr12:53,301,718
INFO 2026-06-08 09:06:07 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:12:32s. Time for last 10,000,000: 16s. Last read position: chr12:98,597,920
INFO 2026-06-08 09:06:24 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 16s. Last read position: chr12:132,509,696
INFO 2026-06-08 09:06:40 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:13:05s. Time for last 10,000,000: 16s. Last read position: chr14:23,645,194
INFO 2026-06-08 09:06:56 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:13:21s. Time for last 10,000,000: 16s. Last read position: chr14:73,739,341
INFO 2026-06-08 09:07:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 16s. Last read position: chr15:32,968,925
INFO 2026-06-08 09:07:29 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:13:54s. Time for last 10,000,000: 16s. Last read position: chr15:72,210,440
INFO 2026-06-08 09:07:45 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 16s. Last read position: chr16:2,116,056
INFO 2026-06-08 09:08:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 15s. Last read position: chr16:22,315,119
INFO 2026-06-08 09:08:17 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 15s. Last read position: chr16:56,625,795
INFO 2026-06-08 09:08:33 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 15s. Last read position: chr16:89,552,686
INFO 2026-06-08 09:08:48 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 15s. Last read position: chr17:17,477,135
INFO 2026-06-08 09:09:04 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 15s. Last read position: chr17:40,168,406
INFO 2026-06-08 09:09:20 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:44s. Time for last 10,000,000: 15s. Last read position: chr17:56,950,456
INFO 2026-06-08 09:09:36 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:16:00s. Time for last 10,000,000: 15s. Last read position: chr17:78,122,630
INFO 2026-06-08 09:09:52 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:16:16s. Time for last 10,000,000: 15s. Last read position: chr18:31,466,651
INFO 2026-06-08 09:10:08 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 15s. Last read position: chr19:2,352,950
INFO 2026-06-08 09:10:23 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:48s. Time for last 10,000,000: 15s. Last read position: chr19:11,514,089
INFO 2026-06-08 09:10:39 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:17:04s. Time for last 10,000,000: 15s. Last read position: chr19:35,722,431
INFO 2026-06-08 09:10:55 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:17:19s. Time for last 10,000,000: 15s. Last read position: chr19:46,787,990
INFO 2026-06-08 09:11:10 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:35s. Time for last 10,000,000: 15s. Last read position: chr19:58,549,349
INFO 2026-06-08 09:11:26 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:51s. Time for last 10,000,000: 15s. Last read position: chr20:46,354,913
INFO 2026-06-08 09:11:41 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:18:06s. Time for last 10,000,000: 15s. Last read position: chr21:8,435,331
INFO 2026-06-08 09:11:57 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:18:21s. Time for last 10,000,000: 15s. Last read position: chr22:23,825,340
INFO 2026-06-08 09:12:13 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:37s. Time for last 10,000,000: 15s. Last read position: chr22:50,189,699
INFO 2026-06-08 09:12:29 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:53s. Time for last 10,000,000: 15s. Last read position: chrX:100,666,865
INFO 2026-06-08 09:12:44 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:19:08s. Time for last 10,000,000: 15s. Last read position: GL000220.1:156,566
INFO 2026-06-08 09:12:57 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:12:57 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:12:57 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:12:57 MarkDuplicates Before output close freeMemory: 203966824; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:57 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:12:57 MarkDuplicates After output close freeMemory: 104192656; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:12:57 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.26 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory