AIH curated blacklist: matched 15 fusion rows (breakpoint_ID in qualified set)
================================================================================
ARRIBA FILTERING SUMMARY
================================================================================
Total fusions: 249
Pass (FILTER=PASS): 21 (8.4%)
Fail (FILTER=FAIL): 228 (91.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 15
All 15 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 54
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 41
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 20
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 14
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 14
confidence_below_min(low<high): 12
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 8
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 4
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
Breakdown by confidence:
high: 21 pass, 6 fail (total: 27)
low: 0 pass, 112 fail (total: 112)
medium: 0 pass, 110 fail (total: 110)
Arriba filter: 249 rows -> 21 PASS; wrote tih_rna_sample_00396_23H5VFLT4_s26.arriba.fusions.filtered.tsv and tih_rna_sample_00396_23H5VFLT4_s26.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00396_23H5VFLT4_s26.arriba.fusions.filter_summary.txt