Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/632bffbeed98a690b177578041a4ec/tih_rna_sample_00116_23H5VFLT4_s36.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/61abda3a3769f07c19974a889853e1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/61abda3a3769f07c19974a889853e1/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory