AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 70
Pass (FILTER=PASS): 6 (8.6%)
Fail (FILTER=FAIL): 64 (91.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 9
All 9 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 8
confidence_below_min(medium<high): 6
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
aih_curated_blacklist: 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
total_reads_below_min(5.0<8.0): 1
total_reads_below_min(4.0<8.0);aih_curated_blacklist: 1
total_reads_below_min(3.0<8.0): 1
Breakdown by confidence:
high: 6 pass, 5 fail (total: 11)
low: 0 pass, 38 fail (total: 38)
medium: 0 pass, 21 fail (total: 21)
Arriba filter: 70 rows -> 6 PASS; wrote V4_0001_RNA_0005_23H5VFLT4_s07.arriba.fusions.filtered.tsv and V4_0001_RNA_0005_23H5VFLT4_s07.arriba.fusions.filtered_pass_only.tsv
Summary written to: V4_0001_RNA_0005_23H5VFLT4_s07.arriba.fusions.filter_summary.txt