File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp003/B23H5VFLT4/nfcore_rnafusion__3e501777--20260519-101300/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0001_exp003_3e501777
- Published
- May 19, 2026 4:35 PM
Content
View in new tab| sample_id | IS_CONTAMINATED | CONTAMINATION_PCT | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | TOTAL_READS | EXPECTED_DISTINCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | Yes | 63.08 | 593548900.0 | 0.004257 | 0.457457 | 322025587.0 | 0.894317 | 0.920336 | 0.097836 | 0.079664 | 287992943.0 | 146486933.0 | 31505657.0 | 12679832.0 | 641.860729 | 272.0 | 0.714381 | 0.616667 | 0.977178 | 0.0 | 175.0 | 158.0 | 0.1 | 1.14 | 0.56 | 0.0 | 0.21 | 3.34 | 0.79 | 0.0 | 9999000000.0 | 413539117.0 | 253 | 689.657377 | 0.459413 | 9.999999999999999e-05 | 94.5912 | 90.02922198789736 | 96.26 | 285665964.0 | 34.8162 | 0.976411 | 80338303217.0 | 593548900.0 | 0.547437 | 98.92481666666667 | 36.597676666666665 | |||||||||
| NTC_0001_0001_23H5VFLT4_s15 | Skipped | N/A | 72882.0 | 0.349003 | 0.421874 | 42135.0 | 0.010063 | 0.023598 | 0.386258 | 0.976402 | 424.0 | 191.0 | 16275.0 | 7903.0 | 0.000152 | 0.0 | 0.0 | 0.0 | 0.922564 | 0.0 | 32.9 | 31.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 9999000000.0 | 36700.0 | 24 | 26.976285999999998 | 0.648042 | 2.5347999999999997 | 4.406000000000001 | 1.83612490030118 | 9.17 | 3342.0 | 43.6114 | 0.895677 | 4257329.0 | 72882.0 | 0.67862 | 17.604858111829326 | 55.950172468767214 |
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