File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0001_exp003/B23H5VFLT4/nfcore_rnafusion__3e501777--20260519-101300/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0001_exp003_3e501777
- Published
- May 19, 2026 4:36 PM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-g3e50177 | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-g3e50177 | READS_PASSING_FILTER_PERCENT | 78.4712 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-g3e50177 | Q30_RUN_WIDE_PERCENT | 94.2677 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-g3e50177 | OCCUPANCY_RATE | 89.6027 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-g3e50177 | YIELD_IN_GB | 9667.394168034 | bclconvert | |
| NTC_0001_0001_23H5VFLT4_s15 | NTC | RNA | rnafusion_3.0.2-g3e50177 | READS | 206994 | bclconvert |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | READS | 487077937 | bclconvert |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | READS_SEQTOOLS | 593548900.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAC_READS_ON_TARGET | 0.894317 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAC_PAIRS_ON_TARGET | 0.920336 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAC_READS_OFF_TARGET | 0.097836 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAC_PAIRS_OFF_TARGET | 0.079664 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | READS_ON_TARGET | 287992943.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | PAIRS_ON_TARGET | 146486933.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | READS_OFF_TARGET | 31505657.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | PAIRS_OFF_TARGET | 12679832.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | GC_BIAS | 0.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | MAPPED_READS | 285665964.0 | star |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAC_UNMAPPED | 0.004257 | star |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | FRAGMENT_LENGTH_MEDIAN | 158.0 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | MITOCHONDRIAL_CONTAMINATION | 0.21 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | RIBOSOMAL_CONTAMINATION | 3.34 | kallisto |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | PCT_CONTAMINATION | 63.08 | contamination |
| NTC_0001_0001_23H5VFLT4_s15 | NTC | RNA | rnafusion_3.0.2-g3e50177 | READS_SEQTOOLS | 72882.0 | seqtools |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | NUMBER_ALL_RNA_FUSIONS | 58 | fusion |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| HD789_0002_RNA_0008_23H5VFLT4_s19 | HD789 | RNA | rnafusion_3.0.2-g3e50177 | NUMBER_FALSE_RNA_FUSIONS | 58 | fusion |
28 rows