File Info
- Filename
- FFPE_HD835_01_RNA_0001_23LGNLLT4_3.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusionreport/FFPE_HD835_01_RNA_0001_23LGNLLT4_3/FFPE_HD835_01_RNA_0001_23LGNLLT4_3.fusions.csv
- Size
- 5.7 KB
- Workflow Run
- dev_rna_exp0002_2cae617
- Published
- May 16, 2026 6:25 AM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| PANK2--MAVS | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:3889728#chr20:3854558,reading-frame: out-of-frame,type: duplication,split_reads1: 300,split_reads2: 280,discordant_mates: 29,coverage1: 4075,coverage2: 1062,confidence: high | position: chr20:3889728:+#chr20:3854558:+,junction_reads: 1282,spanning_reads: 29,ffmp: 4.4354 | |
| TCF7L2--AL158212.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:113040126#chr10:112888735,reading-frame: out-of-frame,type: duplication,split_reads1: 286,split_reads2: 96,discordant_mates: 27,coverage1: 13298,coverage2: 204,confidence: high | position: chr10:113040126:+#chr10:112888735:+,junction_reads: 745,spanning_reads: 26,ffmp: 2.5886 | |
| SPAG9--MBTD1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr17:51120354#chr17:51201696,reading-frame: in-frame,type: duplication,split_reads1: 112,split_reads2: 59,discordant_mates: 2,coverage1: 3926,coverage2: 1561,confidence: high | position: chr17:51120354:-#chr17:51201696:-,junction_reads: 176,spanning_reads: 2,ffmp: 0.6022 |
| GDPD5--MAP6 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:75477619#chr11:75608322,reading-frame: out-of-frame,type: duplication,split_reads1: 30,split_reads2: 54,discordant_mates: 3,coverage1: 1232,coverage2: 98,confidence: high | position: chr11:75477619:-#chr11:75608322:-,junction_reads: 85,spanning_reads: 6,ffmp: 0.3079 | |
| PALLD--PPM1D | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:168711923#chr17:60656599,reading-frame: out-of-frame,type: translocation,split_reads1: 6,split_reads2: 14,discordant_mates: 1,coverage1: 160,coverage2: 1128,confidence: high | position: chr4:168711923:+#chr17:60656599:+,junction_reads: 20,spanning_reads: 1,ffmp: 0.0711 | |
| MIR4713HG--GLDN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:51037681:+#chr15:51377449:+,junction_reads: 20,spanning_reads: 2,ffmp: 0.0733 | ||
| ARHGAP29-AS1--NME2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:94249519:+#chr17:51169937:+,junction_reads: 19,spanning_reads: 0,ffmp: 0.0643 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 13,spanning_reads: 0,ffmp: 0.0107 | ||
| COMMD10--AP3S1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr5:116092700#chr5:115895087,reading-frame: in-frame,type: duplication,split_reads1: 100,split_reads2: 169,discordant_mates: 15,coverage1: 2319,coverage2: 16134,confidence: high | |
| SND1--ZNF800 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:127698953#chr7:127405119,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 126,split_reads2: 75,discordant_mates: 7,coverage1: 36573,coverage2: 127,confidence: high | ||
| SMAD3--AC087482.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:67165384#chr15:67030801,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 78,split_reads2: 57,discordant_mates: 11,coverage1: 6079,coverage2: 91,confidence: high | ||
| AC005993.1--RGS6 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr14:71916030#chr14:71964772,reading-frame: .,type: deletion/read-through,split_reads1: 36,split_reads2: 88,discordant_mates: 12,coverage1: 193,coverage2: 868,confidence: high | |
| NMT2--AL590365.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:15112796#chr10:15189954,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 11,discordant_mates: 0,coverage1: 888,coverage2: 13,confidence: high | ||
| NMT2--FAM171A1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:15112796#chr10:15189954,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 11,discordant_mates: 0,coverage1: 888,coverage2: 13,confidence: high | ||
| ACSL1--AC093844.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:184760357#chr4:183387470,reading-frame: out-of-frame,type: deletion,split_reads1: 25,split_reads2: 5,discordant_mates: 0,coverage1: 378,coverage2: 5,confidence: high | ||
| ACSL1--AC112698.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:184760357#chr4:183387470,reading-frame: out-of-frame,type: deletion,split_reads1: 25,split_reads2: 5,discordant_mates: 0,coverage1: 378,coverage2: 5,confidence: high | ||
| CDKAL1--AL132775.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:20548705#chr6:20401117,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 3,discordant_mates: 0,coverage1: 1365,coverage2: 7,confidence: high | ||
| CDKAL1--E2F3 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr6:20548705#chr6:20401117,reading-frame: out-of-frame,type: duplication,split_reads1: 18,split_reads2: 3,discordant_mates: 0,coverage1: 1365,coverage2: 7,confidence: high | |
| TCF7L2--AL158212.4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:113089540#chr10:112886918,reading-frame: out-of-frame,type: duplication,split_reads1: 13,split_reads2: 2,discordant_mates: 0,coverage1: 1581,coverage2: 15,confidence: high | ||
| RN7SKP172--AC078820.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:76332804#chr12:75694975,reading-frame: .,type: deletion,split_reads1: 4,split_reads2: 5,discordant_mates: 0,coverage1: 21,coverage2: 25,confidence: high | ||
| BBS10--AC078820.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:76332804#chr12:75694975,reading-frame: .,type: deletion,split_reads1: 4,split_reads2: 5,discordant_mates: 0,coverage1: 21,coverage2: 25,confidence: high | ||
| TMEM63A--LEFTY2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:225877395#chr1:225962808,reading-frame: out-of-frame,type: duplication,split_reads1: 5,split_reads2: 4,discordant_mates: 0,coverage1: 1019,coverage2: 5,confidence: high | ||
| TMEM63A--NDUFA3P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:225877395#chr1:225962808,reading-frame: out-of-frame,type: duplication,split_reads1: 5,split_reads2: 4,discordant_mates: 0,coverage1: 1019,coverage2: 5,confidence: high |
24 rows