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Filename
FFPE_HD834_01_RNA_0001_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_HD834_01_RNA_0001_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
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11.2 KB
Workflow Run
dev_rna_exp0002_2cae617
Published
May 16, 2026 7:06 AM

Content

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
SLC34A2--ROS1 9849 263 9849.00 253.96 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 54807 chr6:117329446:- ONLY_REF_SPLICE YES 6342 193 1.59 52.13 GT 1.8892 AG 1.9656 34.1498 2210 0
SLC34A2--ROS1 828 91 828.00 6.80 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 6342 1607 0.15 0.57 GT 1.8892 AG 1.7465 2.8218 999 0
SLC34A2--ROS1 224 101 224.00 2.06 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 56834 chr6:117326414:- ONLY_REF_SPLICE YES 6342 1322 0.05 0.25 GT 1.8892 AG 1.7232 0.7642 183 0
SLC34A2--ROS1 5 263 5.00 0.13 SLC34A2^ENSG00000157765.13 6081 chr4:25664327:+ ROS1^ENSG00000047936.11 54805 chr6:117329448:- INCL_NON_REF_SPLICE YES 6544 63 0.04 4.20 GA 1.8256 AA 1.9329 0.0173 2212 0
SLC34A2--ROS1 33 7 33.00 0.02 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 59109 chr6:117321394:- ONLY_REF_SPLICE YES 6342 2430 0.01 0.02 GT 1.8892 AG 1.9329 0.1116 2083 0
SLC34A2--ROS1 5 42 5.00 0.02 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58031 chr6:117324409:- INCL_NON_REF_SPLICE YES 6210 1760 0.01 0.03 GA 1.7465 TT 1.8892 0.017 1005 0
SLC34A2--ROS1 4 45 4.00 0.02 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 6210 1740 0.01 0.03 GA 1.7465 AT 1.9086 0.0136 1004 0
SLC34A2--ROS1 11 0 11.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 67854 chr6:117288802:- ONLY_REF_SPLICE YES 6342 2058 0.00 0.01 GT 1.8892 AG 1.7465 0.0372 1399 0
SLC34A2--ROS1 8 0 8.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 60245 chr6:117320030:- ONLY_REF_SPLICE YES 6342 3583 0.00 0.00 GT 1.8892 AG 1.5301 0.027 1884 0
SLC34A2--ROS1 6 3 6.00 0.00 SLC34A2^ENSG00000157765.13 4911 chr4:25662798:+ ROS1^ENSG00000047936.11 54807 chr6:117329446:- INCL_NON_REF_SPLICE YES 8599 193 0.00 0.05 CT 1.9219 AG 1.9656 0.0203 2498 0
SLC34A2--ROS1 1 0 1.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 63518 chr6:117311117:- ONLY_REF_SPLICE YES 6342 3232 0.00 0.00 GT 1.8892 AG 1.6049 0.0034 2055 0
QKI--NTRK2 7310 149 7310.00 148.81 QKI^ENSG00000112531.17 13018 chr6:163563719:+ NTRK2^ENSG00000148053.17 51327 chr9:84867243:+ ONLY_REF_SPLICE YES 5381 244 1.39 30.45 GT 1.7819 AG 1.8295 25.2121 1599 0
QKI--NTRK2 7 149 7.00 0.14 QKI^ENSG00000112531.17 13019 chr6:163563720:+ NTRK2^ENSG00000148053.17 51329 chr9:84867245:+ INCL_NON_REF_SPLICE YES 5143 317 0.03 0.49 TA 1.5219 GC 1.7968 0.0242 1597 0
QKI--NTRK2 3 110 3.00 0.04 QKI^ENSG00000112531.17 13013 chr6:163563714:+ NTRK2^ENSG00000148053.17 51324 chr9:84867240:+ INCL_NON_REF_SPLICE YES 5402 27 0.02 4.07 AT 1.9086 TC 1.6402 0.0102 1605 0
QKI--NTRK2 7 0 7.00 0.00 QKI^ENSG00000112531.17 7043 chr6:163455289:+ NTRK2^ENSG00000148053.17 59733 chr9:84934269:+ INCL_NON_REF_SPLICE YES 5741 4354 0.00 0.00 GT 1.7232 AG 1.9329 0.0237 1807 0
TPM3--NTRK1 2023 25 2023.00 25.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 6777 83 0.30 24.39 GT 1.9329 AG 1.6895 6.9226 355 0
EML4--ALK 1923 7 1923.00 6.99 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 2036 517 0.95 3.73 GT 1.6895 AG 1.9086 6.5237 1550 0
EML4--ALK 4 4 4.00 0.01 EML4^ENSG00000143924.19 17394 chr2:42295510:+ ALK^ENSG00000171094.18 58997 chr2:29223534:- INCL_NON_REF_SPLICE YES 2156 444 0.00 0.02 CT 1.8256 AC 1.8892 0.0135 1550 0
CCDC6--RET 822 17 822.00 17.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 3866 79 0.22 10.50 GT 1.8892 AG 1.8323 2.836 2092 0
CCDC6--RET 1 1 1.00 0.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 32735 chr10:43118373:+ ONLY_REF_SPLICE YES 3866 611 0.00 0.00 GT 1.8892 AG 1.7465 0.0034 1157 0
ETV6--NTRK3 732 22 732.00 22.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3350 49 0.23 15.10 GT 1.7819 AG 1.9656 2.5487 1252 0
PTPN20--BMS1P7 423 2 423.00 1.60 PTPN20^ENSG00000204179.10 16907 chr10:46987555:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 161 0 2.63 426.00 GT 1.8892 AG 1.9899 1.4352 169 0
PTPN20--BMS1P7 178 1 178.00 0.25 PTPN20^ENSG00000204179.10 8386 chr10:46946675:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 870 0 0.21 180.00 GT 1.5628 AG 1.9899 0.6025 4980 0
PTPN20--BMS1P7 71 1 71.00 0.10 PTPN20^ENSG00000204179.10 11926 chr10:46965137:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 325 0 0.22 73.00 GT 1.8256 AG 1.9899 0.2403 4794 0
PTPN20--BMS1P7 14 1 14.00 0.02 PTPN20^ENSG00000204179.10 15691 chr10:46984564:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 402 0 0.04 16.00 GT 1.8892 AG 1.9899 0.0474 1037 0
PTPN20--BMS1P7 10 1 10.00 0.01 PTPN20^ENSG00000204179.10 9666 chr10:46947955:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 670 0 0.02 12.00 GT 1.7465 AG 1.9899 0.0338 5431 0
PTPN20--BMS1P7 10 1 10.00 0.01 PTPN20^ENSG00000204179.10 13017 chr10:46968047:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 271 0 0.04 12.00 GT 1.8892 AG 1.9899 0.0338 3704 0
PTPN20--BMS1P7 8 0 8.00 0.00 PTPN20^ENSG00000204179.10 1106 chr10:46911501:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 257 0 0.03 9.00 GT 1.3996 AG 1.9899 0.027 79 1
WAC--SFMBT2 341 4 341.00 3.96 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 35905 chr10:7285954:- ONLY_REF_SPLICE YES 1957 432 0.18 0.80 GT 1.3383 AG 1.7232 1.166 693 0
WAC--SFMBT2 5 1 5.00 0.01 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 38956 chr10:7276989:- ONLY_REF_SPLICE YES 1957 713 0.00 0.01 GT 1.3383 AG 1.7819 0.0169 1214 0
WAC--SFMBT2 2 4 2.00 0.02 WAC^ENSG00000095787.24 4567 chr10:28536059:+ SFMBT2^ENSG00000198879.12 35905 chr10:7285954:- ONLY_REF_SPLICE YES 1730 432 0.00 0.02 GT 1.7819 AG 1.7232 0.0069 870 0
PPL--SEC14L5 137 1 137.00 1.00 PPL^ENSG00000118898.16 10903 chr16:4895261:- SEC14L5^ENSG00000103184.12 28506 chr16:4987557:+ ONLY_REF_SPLICE YES 850 49 0.16 2.78 GT 1.6729 AG 1.9329 0.4665 368 0
PPL--SEC14L5 1 0 1.00 0.00 PPL^ENSG00000118898.16 10903 chr16:4895261:- SEC14L5^ENSG00000103184.12 29098 chr16:4988149:+ ONLY_REF_SPLICE YES 850 174 0.00 0.01 GT 1.6729 AG 1.8892 0.0034 563 0
PEX3--AIG1 100 2 100.00 2.00 PEX3^ENSG00000034693.15 2443 chr6:143459216:+ AIG1^ENSG00000146416.19 27389 chr6:143333282:+ ONLY_REF_SPLICE YES 424 954 0.24 0.11 GT 1.9656 AG 1.6402 0.3448 2434 0
TLK2--AC240565.1 82 0 82.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 1080 73 0.08 1.12 GT 1.8892 AG 1.8892 0.2772 1734 0
TLK2--AC240565.1 1 0 1.00 0.00 TLK2^ENSG00000146872.18 11354 chr17:62523177:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 556 73 0.00 0.03 GT 1.8062 AG 1.8892 0.0034 1453 0
THAP12--ACO1 60 0 60.00 0.00 THAP12^ENSG00000137492.8 1385 chr11:76380748:- ACO1^ENSG00000122729.19 20094 chr9:32405485:+ ONLY_REF_SPLICE YES 1351 630 0.05 0.10 GT 1.7056 AG 1.9329 0.2028 2186 0
DIS3L2--ALPP 48 2 48.00 2.00 DIS3L2^ENSG00000144535.20 16335 chr2:232210405:+ ALPP^ENSG00000163283.7 39266 chr2:232378971:+ ONLY_REF_SPLICE YES 406 434 0.13 0.12 GT 1.8892 AG 1.8323 0.169 1453 0
EFNA5--IKBKB 41 2 41.00 1.86 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 18065 chr8:42290156:+ ONLY_REF_SPLICE YES 1108 869 0.04 0.05 GT 1.5058 AG 1.6402 0.1449 2477 0
EFNA5--IKBKB 2 2 2.00 0.09 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 15623 chr8:42272083:+ ONLY_REF_SPLICE YES 1108 481 0.00 0.01 GT 1.5058 AG 1.9656 0.0071 324 0
EFNA5--IKBKB 1 2 1.00 0.05 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 16970 chr8:42288634:+ ONLY_REF_SPLICE NO 1108 1001 0.00 0.00 GT 1.5058 AG 1.7056 0.0036 1399 0
KDM5C--AL592043.1 40 1 40.00 1.00 KDM5C^ENSG00000126012.12 11205 chrX:53210414:- AL592043.1^ENSG00000233571.1 27972 chrX:34206817:- ONLY_REF_SPLICE YES 1122 0 0.04 42.00 GT 1.9329 AG 1.9656 0.1386 2188 0
ATG16L2--C11orf80 38 1 38.00 1.00 ATG16L2^ENSG00000168010.11 14594 chr11:72828508:+ C11orf80^ENSG00000173715.18 34922 chr11:66821643:+ ONLY_REF_SPLICE YES 398 615 0.10 0.06 GT 1.9086 AG 1.9219 0.1318 1004 0
PCSK6--GOLGA8F 31 0 31.00 0.00 PCSK6^ENSG00000140479.18 2734 chr15:101489374:- GOLGA8F^ENSG00000153684.15 62596 chr15:28387602:+ ONLY_REF_SPLICE YES 483 0 0.07 32.00 GT 1.9656 AG 1.5329 0.1048 756 0
R3HDM2--ANKS1B 14 0 14.00 0.00 R3HDM2^ENSG00000179912.20 1286 chr12:57430720:- ANKS1B^ENSG00000185046.18 32655 chr12:99825389:- ONLY_REF_SPLICE YES 59 274 0.25 0.05 GT 1.7819 AG 1.8323 0.0473 5808 0
CUL4B--TMEM255A 13 3 13.00 3.00 CUL4B^ENSG00000158290.19 20975 chrX:120542966:- TMEM255A^ENSG00000125355.16 62479 chrX:120294051:- ONLY_REF_SPLICE YES 837 135 0.02 0.12 GT 1.8892 AG 1.8256 0.054 2778 0
AC135050.3--KIF22 9 1 9.00 1.00 AC135050.3^ENSG00000260911.2 1093 chr16:31043242:+ KIF22^ENSG00000079616.13 9450 chr16:29798374:+ ONLY_REF_SPLICE YES 2 1777 3.67 0.01 GT 1.9329 AG 1.8295 0.0338 2189 0
TAS2R14--PRH2 8 0 8.00 0.00 TAS2R14^ENSG00000212127.6 2321 chr12:11047020:- PRH2^ENSG00000134551.13 11775 chr12:10930662:+ ONLY_REF_SPLICE YES 125 317 0.07 0.03 GT 1.9086 AG 1.8892 0.027 2006 0
TAS2R14--PRH2 8 0 8.00 0.00 TAS2R14^ENSG00000212127.6 4492 chr12:10973655:- PRH2^ENSG00000134551.13 11775 chr12:10930662:+ ONLY_REF_SPLICE YES 108 317 0.08 0.03 GT 1.9329 AG 1.8892 0.027 1854 0
TAS2R14--PRH2 5 0 5.00 0.00 TAS2R14^ENSG00000212127.6 1152 chr12:11171422:- PRH2^ENSG00000134551.13 11775 chr12:10930662:+ ONLY_REF_SPLICE YES 1648 317 0.00 0.02 GT 1.8256 AG 1.8892 0.0169 2278 0
TAS2R14--PRH2 4 1 4.00 0.36 TAS2R14^ENSG00000212127.6 2321 chr12:11047020:- PRH2^ENSG00000134551.13 10329 chr12:10929216:+ INCL_NON_REF_SPLICE YES 125 0 0.05 6.00 GT 1.9086 AG 1.9656 0.0147 3451 0
TAS2R14--PRH2 4 1 4.00 0.36 TAS2R14^ENSG00000212127.6 2321 chr12:11047020:- PRH2^ENSG00000134551.13 11382 chr12:10930269:+ ONLY_REF_SPLICE YES 125 2 0.05 2.00 GT 1.9086 AG 1.8892 0.0147 2399 0
TAS2R14--PRH2 3 0 3.00 0.00 TAS2R14^ENSG00000212127.6 3425 chr12:11034782:- PRH2^ENSG00000134551.13 11775 chr12:10930662:+ ONLY_REF_SPLICE YES 86 317 0.05 0.01 GT 1.6402 AG 1.8892 0.0101 2326 0
TAS2R14--PRH2 1 1 1.00 0.09 TAS2R14^ENSG00000212127.6 3425 chr12:11034782:- PRH2^ENSG00000134551.13 11382 chr12:10930269:+ ONLY_REF_SPLICE YES 86 2 0.03 1.00 GT 1.6402 AG 1.8892 0.0037 2673 0
TAS2R14--PRH2 1 1 1.00 0.09 TAS2R14^ENSG00000212127.6 4492 chr12:10973655:- PRH2^ENSG00000134551.13 11382 chr12:10930269:+ ONLY_REF_SPLICE YES 108 2 0.03 1.00 GT 1.9329 AG 1.8892 0.0037 1912 0
TAS2R14--PRH2 1 1 1.00 0.09 TAS2R14^ENSG00000212127.6 1152 chr12:11171422:- PRH2^ENSG00000134551.13 11382 chr12:10930269:+ ONLY_REF_SPLICE YES 1648 2 0.00 1.00 GT 1.8256 AG 1.8892 0.0037 2631 0
57 rows