#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	6525	18	6525.00	17.93	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	118	3888	54.99	1.68	GT	1.8892	AG	1.7819	22.1787	627	0
FGFR3--TACC3	9	15	9.00	0.02	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	351	3815	0.07	0.01	AC	1.8892	AG	1.7819	0.0306	633	0
FGFR3--TACC3	8	18	8.00	0.02	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	118	4028	0.23	0.01	GT	1.8892	AG	1.6895	0.0272	1411	0
FGFR3--TACC3	8	18	8.00	0.02	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	25	3959	1.04	0.01	GA	1.8892	TA	1.5219	0.0272	623	0
FGFR3--TACC3	3	15	3.00	0.01	FGFR3^ENSG00000068078.20	9874	chr4:1806930:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	285	3815	0.07	0.00	CG	1.9219	AG	1.7819	0.0102	632	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9592	chr4:1806648:+	TACC3^ENSG00000013810.20	27592	chr4:1739704:+	INCL_NON_REF_SPLICE	YES	2644	3950	0.00	0.00	CG	1.8062	GT	1.5058	0.0102	522	0
TMPRSS2--ERG	4694	0	4694.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	3	134	1173.75	34.78	GT	1.6895	AG	1.9219	15.9114	1104	0
LMNA--NTRK1	1922	13	1922.00	12.98	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	5122	499	0.38	3.87	GT	1.7465	AG	1.5058	6.559	947	0
LMNA--NTRK1	3	12	3.00	0.02	LMNA^ENSG00000160789.23	17735	chr1:156130775:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	YES	5119	554	0.00	0.03	GA	1.8892	TC	1.4566	0.0103	950	0
FGFR3--BAIAP2L1	1893	9	1893.00	9.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	122	58	15.47	32.25	GT	1.8892	AG	1.8062	6.4472	1171	0
ETV6--NTRK3	1893	6	1893.00	6.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	3996	38	0.48	48.72	GT	1.7819	AG	1.9656	6.437	1252	0
TPM3--NTRK1	1815	5	1815.00	5.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	10082	55	0.18	32.52	GT	1.9329	AG	1.6895	6.1692	355	0
NCOA4--RET	1419	10	1419.00	9.98	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	3764	796	0.38	1.79	GT	1.9086	AG	1.8323	4.8438	5144	0
NCOA4--RET	3	10	3.00	0.02	NCOA4^ENSG00000266412.6	9076	chr10:46012882:-	RET^ENSG00000165731.20	30129	chr10:43116586:+	INCL_NON_REF_SPLICE	YES	3734	848	0.00	0.02	TC	1.8323	GA	1.8323	0.0103	5142	0
KIF5B--RET	1369	14	1369.00	13.96	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	2321	22	0.60	60.17	GT	1.9656	AG	1.9656	4.6878	3178	0
KIF5B--RET	4	14	4.00	0.04	KIF5B^ENSG00000170759.11	19979	chr10:32017141:-	RET^ENSG00000165731.20	38836	chr10:43114484:+	INCL_NON_REF_SPLICE	YES	2320	41	0.01	0.45	TA	1.9656	CC	1.9656	0.0137	3175	0
CCDC6--RET	1188	4	1188.00	4.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2855	796	0.42	1.50	GT	1.8892	AG	1.8323	4.0406	2092	0
CD74--ROS1	1007	8	1007.00	7.98	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	28100	62	0.04	16.13	GT	1.7819	AG	1.7465	3.4405	2407	0
CD74--ROS1	3	4	3.00	0.01	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48734	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	28104	101	0.00	0.08	AC	1.9329	TG	1.8892	0.0102	2407	0
CD74--ROS1	3	2	3.00	0.01	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	48779	chr6:117324367:-	INCL_NON_REF_SPLICE	YES	30170	413	0.00	0.01	GG	1.7819	TG	1.7465	0.0102	2384	0
CD74--ROS1	3	0	3.00	0.00	CD74^ENSG00000019582.16	2494	chr5:150407176:-	ROS1^ENSG00000047936.11	49895	chr6:117321314:-	INCL_NON_REF_SPLICE	YES	24645	1760	0.00	0.00	AC	1.9329	CT	1.8295	0.0102	354	0
EML4--ALK	977	0	977.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	1063	75	0.92	12.87	GT	1.6895	AG	1.9086	3.3118	1550	0
EML4--ALK	6	0	6.00	0.00	EML4^ENSG00000143924.19	14412	chr2:42288317:+	ALK^ENSG00000171094.18	59955	chr2:29222576:-	INCL_NON_REF_SPLICE	YES	1967	480	0.00	0.01	TA	1.3383	TG	1.8892	0.0203	1145	0
SLC34A2--ROS1	865	26	865.00	25.90	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	62	892.00	14.16	GT	1.8892	AG	1.7465	3.0199	999	0
SLC34A2--ROS1	5	17	5.00	0.10	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	101	23.00	0.23	GA	1.7465	TG	1.8892	0.0172	1002	0
TFG--NTRK1	731	3	731.00	2.99	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	3316	55	0.22	13.12	GT	1.9329	AG	1.6895	2.488	883	0
TFG--NTRK1	3	3	3.00	0.01	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37656	chr1:156874572:+	INCL_NON_REF_SPLICE	YES	3316	59	0.00	0.12	GT	1.9329	GA	1.7056	0.0102	884	0
PAX8--PPARG	715	1	715.00	1.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	166	23	4.29	29.88	GT	1.8295	AG	1.9329	2.4271	1923	0
SLC45A3--BRAF	635	0	635.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	2247	636.00	0.28	GT	1.5628	AG	1.7465	2.1525	2599	0
EGFR--SEPTIN14	612	3	612.00	3.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	22	34	26.78	17.60	GT	1.8892	AG	1.9899	2.0847	658	0
STX16--NPEPL1	226	2	226.00	1.93	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1341	172	0.17	1.32	GT	1.7968	AG	1.8256	0.7726	1940	0
STX16--NPEPL1	8	2	8.00	0.07	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1311	172	0.01	0.06	GT	1.8062	AG	1.8256	0.0273	2729	0
STX16--NPEPL1	3	0	3.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2417	172	0.00	0.02	GT	1.9899	AG	1.8256	0.0102	1258	0
TLK2--AC240565.1	64	1	64.00	1.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	622	37	0.11	1.74	GT	1.8892	AG	1.8892	0.2203	1734	0