File Info
- Filename
- SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2.FusionInspector.fusions.abridged.tsv
- Size
- 6.1 KB
- Workflow Run
- dev_rna_exp0002_2cae617
- Published
- May 16, 2026 7:18 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| FGFR3--TACC3 | 4330 | 8 | 4330.00 | 7.98 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 93 | 3201 | 46.16 | 1.36 | GT | 1.8892 | AG | 1.7819 | 14.7303 | 627 | 0 |
| FGFR3--TACC3 | 5 | 8 | 5.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9880 | chr4:1806936:+ | TACC3^ENSG00000013810.20 | 27593 | chr4:1739705:+ | INCL_NON_REF_SPLICE | YES | 27 | 3281 | 0.50 | 0.00 | GA | 1.8892 | TA | 1.5219 | 0.017 | 623 | 0 |
| FGFR3--TACC3 | 4 | 8 | 4.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 22063 | chr4:1730798:+ | INCL_NON_REF_SPLICE | NO | 93 | 2880 | 0.14 | 0.00 | GT | 1.8892 | AG | 1.6895 | 0.0136 | 1411 | 0 |
| FGFR3--TACC3 | 3 | 0 | 3.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9097 | chr4:1806153:+ | TACC3^ENSG00000013810.20 | 27645 | chr4:1739757:+ | INCL_NON_REF_SPLICE | YES | 483 | 3472 | 0.01 | 0.00 | AC | 1.8892 | CC | 1.7819 | 0.0102 | 129 | 0 |
| TMPRSS2--ERG | 3861 | 0 | 3861.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 8 | 71 | 429.11 | 53.64 | GT | 1.6895 | AG | 1.9219 | 13.1107 | 1104 | 0 |
| FGFR3--BAIAP2L1 | 1265 | 3 | 1265.00 | 3.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 97 | 55 | 12.95 | 22.66 | GT | 1.8892 | AG | 1.8062 | 4.3057 | 1171 | 0 |
| ETV6--NTRK3 | 1184 | 6 | 1184.00 | 5.98 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 3009 | 15 | 0.40 | 74.44 | GT | 1.7819 | AG | 1.9656 | 4.0408 | 1252 | 0 |
| ETV6--NTRK3 | 6 | 4 | 6.00 | 0.02 | ETV6^ENSG00000139083.11 | 11230 | chr12:11869962:+ | NTRK3^ENSG00000140538.16 | 46232 | chr15:87940759:- | INCL_NON_REF_SPLICE | YES | 3127 | 1 | 0.00 | 5.50 | AT | 1.9656 | TC | 1.9899 | 0.0205 | 1258 | 0 |
| LMNA--NTRK1 | 1168 | 5 | 1168.00 | 4.99 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 3743 | 305 | 0.31 | 3.84 | GT | 1.7465 | AG | 1.5058 | 3.983 | 947 | 0 |
| LMNA--NTRK1 | 5 | 0 | 5.00 | 0.00 | LMNA^ENSG00000160789.23 | 12545 | chr1:156115077:+ | NTRK1^ENSG00000198400.13 | 40366 | chr1:156874983:+ | INCL_NON_REF_SPLICE | YES | 3336 | 852 | 0.00 | 0.01 | AC | 1.8892 | GG | 1.7968 | 0.017 | 554 | 0 |
| LMNA--NTRK1 | 3 | 4 | 3.00 | 0.01 | LMNA^ENSG00000160789.23 | 17734 | chr1:156130774:+ | NTRK1^ENSG00000198400.13 | 40292 | chr1:156874909:+ | INCL_NON_REF_SPLICE | NO | 3743 | 336 | 0.00 | 0.02 | TG | 1.7465 | TC | 1.4566 | 0.0102 | 949 | 0 |
| NCOA4--RET | 1030 | 2 | 1030.00 | 2.00 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2841 | 479 | 0.36 | 2.15 | GT | 1.9086 | AG | 1.8323 | 3.5043 | 5144 | 0 |
| TPM3--NTRK1 | 1023 | 1 | 1023.00 | 1.00 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 7587 | 34 | 0.14 | 29.29 | GT | 1.9329 | AG | 1.6895 | 3.4772 | 355 | 0 |
| KIF5B--RET | 785 | 6 | 785.00 | 5.97 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 1637 | 16 | 0.48 | 46.59 | GT | 1.9656 | AG | 1.9656 | 2.6859 | 3178 | 0 |
| KIF5B--RET | 4 | 6 | 4.00 | 0.03 | KIF5B^ENSG00000170759.11 | 19980 | chr10:32017140:- | RET^ENSG00000165731.20 | 38836 | chr10:43114484:+ | INCL_NON_REF_SPLICE | YES | 1635 | 26 | 0.01 | 0.41 | AG | 1.9656 | CC | 1.9656 | 0.0137 | 3174 | 0 |
| CD74--ROS1 | 750 | 5 | 750.00 | 4.95 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 23171 | 43 | 0.03 | 17.18 | GT | 1.7819 | AG | 1.7465 | 2.5636 | 2407 | 0 |
| CD74--ROS1 | 7 | 5 | 7.00 | 0.05 | CD74^ENSG00000019582.16 | 4992 | chr5:150404678:- | ROS1^ENSG00000047936.11 | 48732 | chr6:117324414:- | INCL_NON_REF_SPLICE | YES | 23179 | 47 | 0.00 | 0.27 | AC | 1.9329 | GA | 1.8295 | 0.024 | 2408 | 0 |
| EML4--ALK | 717 | 0 | 717.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 781 | 53 | 0.92 | 13.30 | GT | 1.6895 | AG | 1.9086 | 2.4347 | 1550 | 0 |
| CCDC6--RET | 674 | 2 | 674.00 | 2.00 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2279 | 479 | 0.30 | 1.41 | GT | 1.8892 | AG | 1.8323 | 2.2955 | 2092 | 0 |
| SLC34A2--ROS1 | 534 | 9 | 534.00 | 9.00 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 1 | 43 | 272.00 | 12.36 | GT | 1.8892 | AG | 1.7465 | 1.8439 | 999 | 0 |
| SLC34A2--ROS1 | 3 | 0 | 3.00 | 0.00 | SLC34A2^ENSG00000157765.13 | 4925 | chr4:25662812:+ | ROS1^ENSG00000047936.11 | 60312 | chr6:117319963:- | INCL_NON_REF_SPLICE | YES | 609 | 1343 | 0.01 | 0.00 | CT | 1.7968 | GT | 1.9086 | 0.0102 | 1153 | 0 |
| SLC45A3--BRAF | 457 | 0 | 457.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 0 | 1689 | 458.00 | 0.27 | GT | 1.5628 | AG | 1.7465 | 1.5518 | 2599 | 0 |
| PAX8--PPARG | 431 | 3 | 431.00 | 3.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 128 | 18 | 3.37 | 22.89 | GT | 1.8295 | AG | 1.9329 | 1.4737 | 1923 | 0 |
| TFG--NTRK1 | 369 | 1 | 369.00 | 1.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 2146 | 34 | 0.17 | 10.60 | GT | 1.9329 | AG | 1.6895 | 1.2564 | 883 | 0 |
| EGFR--SEPTIN14 | 367 | 1 | 367.00 | 1.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 7 | 37 | 46.12 | 9.71 | GT | 1.8892 | AG | 1.9899 | 1.2496 | 658 | 0 |
| STX16--NPEPL1 | 141 | 2 | 141.00 | 1.97 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1123 | 175 | 0.13 | 0.82 | GT | 1.7968 | AG | 1.8256 | 0.4855 | 1940 | 0 |
| STX16--NPEPL1 | 4 | 1 | 4.00 | 0.03 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1154 | 175 | 0.01 | 0.03 | GT | 1.8062 | AG | 1.8256 | 0.0137 | 2729 | 0 |
| STX16--NPEPL1 | 1 | 0 | 1.00 | 0.00 | STX16^ENSG00000124222.22 | 1835 | chr20:58652087:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 2101 | 175 | 0.00 | 0.01 | GT | 1.9899 | AG | 1.8256 | 0.0034 | 1258 | 0 |
| TLK2--FAM157A | 44 | 0 | 44.00 | 0.00 | TLK2^ENSG00000146872.18 | 17137 | chr17:62560126:+ | FAM157A^ENSG00000236438.7 | 45187 | chr3:198180755:+ | ONLY_REF_SPLICE | YES | 579 | 39 | 0.08 | 1.12 | GT | 1.8892 | AG | 1.8892 | 0.1494 | 2733 | 0 |
| BX571818.1--TMEM200A | 23 | 0 | 23.00 | 0.00 | BX571818.1^ENSG00000285417.1 | 5765 | chr1:206053265:+ | TMEM200A^ENSG00000164484.12 | 19910 | chr6:130440407:+ | ONLY_REF_SPLICE | YES | 228 | 130 | 0.10 | 0.18 | GT | 1.9656 | AG | 1.7465 | 0.0781 | 1493 | 0 |
31 rows