File Info

Filename
multiqc_general_stats_controls.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
Size
3.6 KB
Workflow Run
dev_rna_exp0002_2cae617
Published
May 16, 2026 8:19 AM

Content

View in new tab
sample_id IS_CONTAMINATED CONTAMINATION_PCT READS FRAC_UNMAPPED FRAC_DUPES UNIQUE_READS FRAC_READS_ON_TARGET FRAC_PAIRS_ON_TARGET FRAC_READS_OFF_TARGET FRAC_PAIRS_OFF_TARGET READS_ON_TARGET PAIRS_ON_TARGET READS_OFF_TARGET PAIRS_OFF_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X N_Q30 GC_BIAS FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS MITOCHONDRIAL_CONTAMINATION RIBOSOMAL_CONTAMINATION PCT_HK_TPM PCT_MALE_TPM TOTAL_READS EXPECTED_DISTINCT SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT MAPPED_READS PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 Yes 62.69 592165102.0 0.004715 0.364609 376256232.0 0.907513 0.931689 0.085067 0.068311 341457548.0 173047358.0 32006810.0 12687752.0 727.923845 321.0 0.72861 0.634882 0.973689 0.0 163.2 148.0 0.1 0.83 0.43 0.0 0.22 2.44 0.62 0.0 9999000000.0 649515898.0 204 512.315038 0.366336 9.999999999999999e-05 95.2212 89.05010800872915 95.98 284165834.0 24.7227 0.972816 77295663136.0 592165102.0 0.555199 98.69418366666667 45.511999833333334
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 Yes 62.59 592194526.0 0.004705 0.374069 370672955.0 0.907522 0.931807 0.084962 0.068193 336393929.0 170447440.0 31493035.0 12473964.0 719.570607 325.0 0.72907 0.635295 0.974231 0.0 163.7 149.0 0.11 0.82 0.43 0.0 0.24 2.44 0.62 0.0 9999000000.0 633898399.0 209 545.181666 0.375837 9.999999999999999e-05 95.34620000000001 89.73956572705853 96.15 284700262.0 24.9034 0.973367 77606682838.0 592194526.0 0.549184 98.69908766666666 45.241302
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 Yes 63.05 591293818.0 0.004869 0.389661 360889648.0 0.901385 0.924864 0.090638 0.075136 325300385.0 164588217.0 32710380.0 13371204.0 674.999886 313.0 0.726662 0.631568 0.973913 0.0 156.2 142.0 0.12 0.83 0.43 0.0 0.26 2.46 0.62 0.0 9999000000.0 600608353.0 189 480.170775 0.391568 9.999999999999999e-05 95.1577 89.95165674445279 96.17 284323430.0 25.0728 0.973026 76189497645.0 591293818.0 0.543102 98.54896966666666 49.42678883333333
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 Yes 61.65 594651918.0 0.005342 0.425625 341553175.0 0.882 0.908288 0.1087 0.091712 301250001.0 153201468.0 37126794.0 15469178.0 661.001871 283.0 0.726638 0.628919 0.97782 0.0 170.2 155.0 0.15 1.7 0.56 0.0 0.32 4.98 0.85 0.0 9999000000.0 476784704.0 225 558.778359 0.427911 9.999999999999999e-05 93.81819999999999 88.70907508034618 95.83 284942284.0 32.020900000000005 0.977004 80051643542.0 594651918.0 0.55006 99.108653 39.0479635
NTC_0001_0001_23LGNLLT4_1 Skipped N/A 458422.0 0.392187 0.486499 235400.0 0.007774 0.032185 0.228475 0.967815 1830.0 862.0 53783.0 25921.0 0.000669 0.0 0.0 0.0 0.943991 0.0 42.5 31.0 0.0 0.04 0.02 0.0 0.0 0.12 0.01 0.0 9999000000.0 106835.0 23 24.338618 0.800409 2.5699 6.3182 2.1172850533683056 9.81 22478.0 65.5152 0.924257 28776086.0 458422.0 0.667311 6.853488009812097 52.45170870007353
NTC_0001_0001_23LGNLLT4_2 Skipped N/A 81812.0 0.300592 0.440816 45748.0 0.015083 0.03199 0.447364 0.96801 690.0 327.0 20466.0 9895.0 0.000416 0.0 0.0 0.0 0.922359 0.0 37.1 31.0 0.0 0.0 0.08 0.0 0.0 0.0 0.21 0.0 9999000000.0 70550.0 22 25.249622 0.630269 2.7338 6.0295000000000005 2.309717616319968 12.36 5057.0 54.6452 0.889981 4227167.0 81812.0 0.681479 6.381053702184215 52.28428494323411
7 rows