File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
Size
8.2 KB
Workflow Run
dev_rna_exp0002_2cae617
Published
May 16, 2026 8:20 AM

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 79.5227 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 94.4293 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 91.755 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9796.925386976 bclconvert
NTC_0001_0001_23LGNLLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 3344443 bclconvert
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 586052933 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 522934407 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS 480325155 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS 535136407 bclconvert
NTC_0001_0001_23LGNLLT4_2 NTC RNA rnafusion_3.0.2-gunknown READS 641054 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592165102.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.907513 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.931689 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.085067 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.068311 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 341457548.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 173047358.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 32006810.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 12687752.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284165834.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004715 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 148.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.22 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.44 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.69 contamination
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592194526.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.907522 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.931807 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.084962 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.068193 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 336393929.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 170447440.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 31493035.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 12473964.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284700262.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004705 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 149.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.24 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.44 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.59 contamination
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 591293818.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.901385 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.924864 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.090638 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.075136 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 325300385.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 164588217.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 32710380.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 13371204.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284323430.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004869 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 142.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.26 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.46 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 63.05 contamination
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 594651918.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.882 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.908288 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.1087 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.091712 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 301250001.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 153201468.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 37126794.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 15469178.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284942284.0 star
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005342 star
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 155.0 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.32 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 4.98 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 61.65 contamination
NTC_0001_0001_23LGNLLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 458422.0 seqtools
NTC_0001_0001_23LGNLLT4_2 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 81812.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 51 fusion
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 51 fusion
81 rows