File Info

Filename
tih_rna_sample_00017_23LGNLLT4_1.attempt2.command.log
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion_100M__5f1fa79--20260304-095416/QC/preseq/log/tih_rna_sample_00017_23LGNLLT4_1.attempt2.command.log
Size
13.1 KB
Published
Mar 09, 2026 2:38 PM
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
paired = 97740385
unpaired = 1547496
MERGED PAIRED END READS = 97740385
MATES PROCESSED = 197028266
TOTAL READS     = 99287881
DISTINCT READS  = 6.36735e+07
DISTINCT COUNTS = 1123
MAX COUNT       = 300170
COUNTS OF 1     = 4.89528e+07
MAX TERMS       = 100
OBSERVED COUNTS (300171)
1	48952760
2	9670177
3	2604565
4	956010
5	453154
6	255951
7	161151
8	109769
9	79401
10	59254
11	46354
12	36490
13	30236
14	24723
15	20825
16	17723
17	14952
18	13238
19	11607
20	10363
21	9053
22	8246
23	7266
24	6493
25	5879
26	5423
27	4894
28	4518
29	4111
30	3967
31	3608
32	3428
33	3198
34	2868
35	2658
36	2527
37	2338
38	2250
39	2129
40	1909
41	1874
42	1762
43	1727
44	1607
45	1503
46	1428
47	1342
48	1355
49	1265
50	1198
51	1104
52	1071
53	1023
54	1014
55	919
56	967
57	860
58	770
59	831
60	768
61	729
62	746
63	741
64	667
65	692
66	620
67	651
68	585
69	596
70	515
71	490
72	509
73	487
74	483
75	480
76	477
77	423
78	449
79	444
80	390
81	410
82	362
83	345
84	348
85	327
86	348
87	348
88	323
89	311
90	314
91	305
92	276
93	290
94	268
95	289
96	263
97	267
98	255
99	251
100	243
101	205
102	228
103	244
104	203
105	229
106	207
107	177
108	204
109	215
110	191
111	171
112	172
113	178
114	196
115	193
116	179
117	176
118	158
119	161
120	151
121	179
122	167
123	142
124	114
125	147
126	144
127	136
128	143
129	142
130	126
131	140
132	149
133	108
134	118
135	129
136	124
137	112
138	128
139	131
140	109
141	108
142	88
143	95
144	110
145	99
146	105
147	100
148	95
149	102
150	92
151	90
152	77
153	85
154	83
155	101
156	89
157	82
158	82
159	76
160	74
161	86
162	76
163	76
164	60
165	70
166	64
167	77
168	77
169	56
170	65
171	62
172	71
173	73
174	74
175	68
176	58
177	56
178	59
179	72
180	57
181	59
182	50
183	57
184	50
185	44
186	47
187	54
188	43
189	57
190	55
191	49
192	62
193	48
194	43
195	62
196	52
197	50
198	47
199	51
200	57
201	30
202	58
203	50
204	41
205	41
206	39
207	40
208	38
209	45
210	37
211	34
212	36
213	36
214	39
215	45
216	47
217	28
218	31
219	46
220	30
221	45
222	40
223	34
224	35
225	36
226	44
227	44
228	26
229	33
230	31
231	27
232	36
233	31
234	41
235	29
236	29
237	33
238	33
239	31
240	34
241	32
242	28
243	26
244	23
245	25
246	27
247	27
248	26
249	23
250	28
251	23
252	26
253	21
254	20
255	27
256	23
257	18
258	24
259	20
260	21
261	17
262	17
263	25
264	27
265	16
266	23
267	21
268	23
269	25
270	17
271	26
272	19
273	21
274	20
275	22
276	15
277	15
278	16
279	21
280	29
281	18
282	18
283	15
284	21
285	20
286	19
287	19
288	17
289	16
290	20
291	12
292	22
293	12
294	11
295	19
296	8
297	14
298	16
299	26
300	19
301	20
302	12
303	17
304	14
305	23
306	11
307	9
308	11
309	21
310	13
311	15
312	17
313	10
314	11
315	11
316	15
317	13
318	17
319	15
320	15
321	17
322	20
323	14
324	11
325	16
326	11
327	13
328	21
329	13
330	10
331	5
332	13
333	18
334	13
335	13
336	16
337	13
338	13
339	19
340	9
341	15
342	9
343	14
344	10
345	6
346	16
347	16
348	9
349	12
350	6
351	13
352	6
353	11
354	12
355	12
356	11
357	4
358	11
359	12
360	12
361	11
362	12
363	14
364	11
365	16
366	7
367	8
368	11
369	10
370	9
371	7
372	6
373	12
374	9
375	7
376	4
377	8
378	11
379	6
380	9
381	12
382	10
383	6
384	15
385	10
386	3
387	7
388	12
389	11
390	6
391	8
392	3
393	12
394	9
395	5
396	6
397	9
398	9
399	6
400	9
401	4
402	10
403	10
404	9
405	7
406	10
407	10
408	7
409	5
410	8
411	6
412	8
413	10
414	6
415	6
416	5
417	9
418	4
419	8
420	9
421	9
422	6
423	9
424	12
425	6
426	4
427	5
428	12
429	7
430	10
431	5
432	6
433	10
434	7
435	7
436	6
437	8
438	7
439	7
440	4
441	3
442	3
443	8
444	6
445	1
446	7
447	6
448	4
449	3
450	13
451	2
452	9
453	5
454	9
455	6
456	10
457	5
458	5
459	5
460	3
461	8
462	4
463	5
464	12
465	4
466	8
467	4
468	3
469	5
470	5
471	5
472	3
473	8
474	5
475	2
476	2
477	6
478	1
479	4
480	9
481	3
482	5
483	2
484	6
485	3
486	4
487	3
488	2
489	5
490	7
491	3
492	5
493	1
494	3
495	6
496	3
497	7
498	5
499	7
500	6
501	1
502	3
503	3
504	5
505	4
506	7
507	4
508	4
509	3
510	8
511	1
512	5
513	3
514	3
515	4
516	5
517	3
518	4
519	4
520	3
521	3
522	3
523	6
524	3
526	1
527	2
528	3
529	1
530	1
531	1
532	2
533	1
534	1
535	2
536	4
537	1
538	2
539	5
540	4
541	5
542	1
543	2
544	3
545	2
546	2
547	2
548	2
549	2
550	5
551	2
552	2
553	6
554	5
555	2
556	5
557	2
558	5
559	6
560	8
562	3
563	1
564	4
565	5
566	3
567	1
568	2
569	4
570	1
571	6
572	3
574	3
575	4
576	2
577	4
578	1
579	1
580	3
581	3
582	2
583	6
584	5
585	4
586	5
587	4
589	3
590	2
591	2
592	1
593	2
594	3
595	3
596	2
597	2
598	5
599	4
600	2
601	2
602	1
603	2
604	3
605	3
606	3
607	2
608	1
609	1
610	1
611	5
612	4
613	1
614	2
615	1
616	3
617	1
618	4
619	1
620	2
621	1
622	2
624	1
625	1
626	2
628	5
630	2
631	2
632	2
633	2
634	1
635	3
636	1
637	4
638	4
639	3
640	2
641	1
642	3
643	1
644	1
645	2
647	3
649	2
650	2
651	1
652	2
653	2
654	4
655	2
656	2
657	1
659	3
660	3
661	1
662	2
663	2
664	1
665	2
666	3
667	2
668	1
669	1
670	2
672	1
673	2
674	3
676	3
677	1
678	3
679	1
681	1
682	1
683	4
684	1
685	3
686	1
687	1
688	1
689	3
690	3
691	3
692	2
694	2
695	3
696	3
697	4
698	1
699	2
700	1
701	2
702	2
703	3
704	3
705	4
706	3
707	1
708	4
712	4
714	2
717	2
718	3
719	1
720	1
721	3
723	2
724	1
725	1
726	1
727	1
728	3
729	2
730	1
731	2
732	2
733	3
734	1
735	1
736	1
738	2
740	3
741	1
742	1
743	1
744	1
745	2
746	1
747	2
748	3
749	1
752	2
754	4
755	2
756	2
757	2
758	2
759	2
760	1
761	2
762	1
765	2
766	1
767	2
768	2
770	2
771	2
772	1
773	1
774	2
775	1
777	2
779	2
780	2
781	1
782	2
783	1
785	2
786	2
788	2
789	3
790	1
791	1
793	2
794	1
795	2
796	3
797	2
798	3
799	1
800	2
801	1
804	1
806	2
807	1
808	1
809	1
810	1
811	1
812	2
813	2
814	2
817	2
818	2
819	1
822	2
823	1
824	1
827	2
829	2
832	1
833	1
834	2
836	1
837	1
838	1
839	1
841	1
842	1
844	1
845	1
847	1
848	1
849	1
850	2
851	2
852	1
853	2
855	2
858	1
863	1
866	2
870	2
876	1
877	2
878	1
879	1
881	1
883	1
884	1
885	1
886	1
887	3
888	2
889	1
891	3
894	1
895	1
896	3
897	1
898	2
899	4
901	1
902	1
906	2
907	2
908	3
909	2
911	3
912	2
913	1
916	1
917	2
918	1
919	1
920	1
922	2
927	2
928	1
934	1
936	2
937	1
938	1
942	1
943	1
944	1
945	1
946	1
947	1
948	1
950	1
951	1
952	1
954	1
962	1
963	1
968	2
970	1
971	1
976	1
978	1
979	1
980	2
981	1
982	1
985	2
986	1
987	1
988	1
989	1
993	2
1002	1
1003	1
1004	1
1005	1
1008	1
1016	2
1021	2
1022	2
1023	1
1026	2
1028	1
1031	1
1035	1
1037	1
1040	1
1041	1
1045	3
1051	1
1052	1
1054	2
1061	1
1064	1
1065	2
1066	2
1068	1
1069	1
1070	2
1073	2
1074	1
1078	1
1081	1
1082	1
1086	2
1087	1
1088	1
1091	1
1092	1
1094	1
1095	2
1097	1
1102	1
1103	1
1104	1
1106	1
1107	1
1109	1
1111	1
1114	2
1116	2
1119	1
1120	1
1122	2
1125	1
1129	1
1135	1
1136	1
1137	1
1138	2
1140	1
1144	1
1149	1
1151	1
1153	1
1155	2
1160	1
1164	1
1165	1
1169	1
1174	1
1180	1
1188	1
1189	2
1191	1
1195	1
1198	1
1199	1
1203	1
1206	2
1209	1
1210	1
1219	2
1221	1
1227	2
1242	1
1243	1
1244	1
1245	1
1247	1
1253	1
1257	2
1260	1
1264	1
1266	1
1287	1
1290	1
1293	1
1297	1
1299	1
1303	2
1305	1
1308	1
1311	1
1315	1
1317	1
1322	1
1324	1
1327	1
1334	1
1337	2
1342	1
1346	1
1349	1
1356	2
1359	1
1365	1
1366	1
1376	1
1382	1
1391	1
1393	1
1397	2
1399	1
1406	1
1407	1
1410	1
1415	1
1416	1
1425	1
1427	1
1433	1
1436	1
1459	1
1464	1
1468	1
1470	1
1472	1
1475	1
1477	1
1481	1
1489	1
1490	2
1495	1
1497	1
1507	1
1509	1
1510	1
1513	1
1514	2
1515	1
1516	1
1522	1
1526	1
1530	1
1532	1
1534	1
1537	1
1546	1
1548	1
1563	1
1570	1
1581	1
1584	1
1593	1
1611	1
1613	1
1614	1
1628	1
1647	1
1649	1
1657	1
1661	1
1684	1
1691	1
1713	1
1714	1
1715	1
1745	1
1747	2
1749	1
1769	1
1808	1
1814	1
1865	1
1895	1
1898	2
1904	1
1939	1
1955	1
1959	1
1961	1
1988	1
2012	1
2044	1
2053	1
2056	1
2076	1
2086	1
2112	1
2119	1
2141	1
2167	1
2179	1
2184	1
2188	1
2218	1
2228	1
2253	1
2279	1
2292	1
2308	1
2349	1
2365	1
2381	1
2398	1
2431	1
2437	1
2531	1
2547	1
2551	1
2579	1
2607	1
2703	1
2756	1
2920	1
2925	1
2936	1
3003	1
3092	1
3093	1
3195	1
3219	1
3305	1
3795	1
3879	1
4324	1
4330	1
4571	1
4592	1
4725	1
4903	1
5676	1
5724	1
5778	1
5816	1
8507	1
9071	1
300170	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]