File Info

Filename
tih_rna_sample_00375_23LGNLLT4_1.attempt2.command.log
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002/A23LGNLLT4/nfcore_rnafusion_100M__5f1fa79--20260304-095416/QC/preseq/log/tih_rna_sample_00375_23LGNLLT4_1.attempt2.command.log
Size
13.3 KB
Published
Mar 09, 2026 2:44 PM
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
paired = 96990163
unpaired = 1706588
MERGED PAIRED END READS = 96990163
MATES PROCESSED = 195686914
TOTAL READS     = 98696751
DISTINCT READS  = 4.97796e+07
DISTINCT COUNTS = 1153
MAX COUNT       = 346784
COUNTS OF 1     = 3.2252e+07
MAX TERMS       = 100
OBSERVED COUNTS (346785)
1	32251986
2	10221555
3	3693576
4	1486424
5	683802
6	361026
7	216084
8	142144
9	101067
10	75405
11	59576
12	47683
13	39384
14	32795
15	28134
16	24606
17	21537
18	18832
19	16905
20	14997
21	13301
22	12365
23	11074
24	10082
25	9576
26	8618
27	7741
28	7500
29	6821
30	6404
31	5944
32	5554
33	5175
34	4868
35	4616
36	4285
37	4077
38	3838
39	3705
40	3432
41	3292
42	3097
43	2957
44	2834
45	2684
46	2506
47	2358
48	2362
49	2203
50	2088
51	2027
52	1960
53	1837
54	1745
55	1732
56	1688
57	1606
58	1579
59	1547
60	1417
61	1373
62	1256
63	1262
64	1244
65	1239
66	1160
67	1143
68	1074
69	1098
70	1064
71	975
72	920
73	910
74	874
75	880
76	833
77	835
78	773
79	780
80	740
81	700
82	692
83	681
84	681
85	629
86	622
87	647
88	610
89	604
90	574
91	562
92	524
93	535
94	513
95	521
96	492
97	479
98	457
99	467
100	450
101	424
102	462
103	453
104	398
105	349
106	402
107	388
108	333
109	369
110	392
111	351
112	307
113	345
114	306
115	303
116	295
117	285
118	317
119	275
120	288
121	305
122	284
123	246
124	263
125	241
126	240
127	231
128	248
129	263
130	238
131	222
132	200
133	218
134	188
135	201
136	190
137	236
138	205
139	189
140	183
141	205
142	208
143	189
144	229
145	179
146	165
147	180
148	174
149	190
150	191
151	153
152	169
153	172
154	179
155	163
156	156
157	124
158	136
159	157
160	122
161	135
162	133
163	124
164	136
165	119
166	120
167	122
168	115
169	113
170	116
171	114
172	126
173	108
174	108
175	96
176	97
177	117
178	93
179	98
180	87
181	86
182	112
183	132
184	87
185	91
186	88
187	95
188	89
189	99
190	77
191	87
192	85
193	93
194	74
195	83
196	88
197	85
198	73
199	91
200	62
201	69
202	68
203	63
204	80
205	64
206	84
207	75
208	95
209	68
210	90
211	68
212	66
213	68
214	71
215	70
216	62
217	76
218	65
219	78
220	75
221	55
222	47
223	52
224	65
225	64
226	58
227	69
228	50
229	62
230	37
231	46
232	46
233	42
234	59
235	65
236	53
237	55
238	40
239	71
240	44
241	31
242	48
243	54
244	46
245	59
246	49
247	37
248	44
249	46
250	59
251	32
252	36
253	45
254	47
255	52
256	35
257	44
258	46
259	38
260	38
261	45
262	47
263	48
264	39
265	33
266	58
267	38
268	35
269	44
270	27
271	24
272	37
273	30
274	30
275	20
276	26
277	25
278	37
279	27
280	28
281	38
282	29
283	23
284	34
285	32
286	27
287	27
288	18
289	42
290	21
291	30
292	31
293	30
294	28
295	23
296	27
297	20
298	24
299	30
300	16
301	27
302	18
303	27
304	28
305	17
306	20
307	30
308	28
309	20
310	19
311	19
312	15
313	12
314	21
315	23
316	26
317	15
318	20
319	25
320	13
321	21
322	18
323	18
324	13
325	25
326	23
327	23
328	13
329	21
330	18
331	24
332	17
333	33
334	23
335	23
336	24
337	20
338	10
339	17
340	22
341	26
342	15
343	15
344	18
345	17
346	17
347	10
348	13
349	18
350	15
351	23
352	9
353	13
354	14
355	13
356	17
357	9
358	16
359	24
360	17
361	11
362	14
363	15
364	20
365	12
366	9
367	13
368	19
369	18
370	13
371	17
372	7
373	24
374	9
375	18
376	17
377	13
378	17
379	14
380	17
381	14
382	9
383	8
384	7
385	15
386	12
387	8
388	14
389	13
390	11
391	10
392	12
393	12
394	10
395	11
396	10
397	12
398	14
399	11
400	15
401	13
402	8
403	12
404	11
405	10
406	15
407	8
408	15
409	16
410	13
411	8
412	10
413	7
414	4
415	10
416	13
417	10
418	4
419	9
420	10
421	7
422	8
423	7
424	5
425	13
426	7
427	11
428	5
429	9
430	8
431	14
432	8
433	11
434	10
435	10
436	9
437	8
438	8
439	5
440	11
441	8
442	6
443	10
444	6
445	7
446	7
447	7
448	10
449	6
450	9
451	7
452	14
453	10
454	9
455	8
456	9
457	13
458	3
459	14
460	10
461	6
462	8
463	9
464	9
465	7
466	7
467	7
468	10
469	4
470	6
471	7
472	4
473	7
474	7
475	6
476	5
477	4
478	9
479	7
480	7
481	6
482	4
483	7
484	6
485	5
486	7
487	9
488	9
489	4
490	8
491	13
492	8
493	4
494	8
495	3
496	7
497	9
498	7
499	13
500	6
501	8
502	7
503	1
504	6
505	8
506	5
507	10
508	7
509	7
510	9
511	6
512	6
513	4
514	4
515	6
516	8
517	3
518	8
519	5
520	2
521	3
522	6
523	8
524	6
525	3
526	3
527	6
528	2
529	6
530	4
531	6
532	5
533	2
534	2
535	5
536	6
537	8
538	9
539	5
540	6
541	2
542	7
543	7
545	3
546	4
547	1
548	7
549	4
550	5
551	6
552	5
553	2
554	4
555	5
556	5
557	9
558	7
559	4
560	1
561	4
562	4
563	5
564	7
565	3
566	4
567	9
568	7
569	5
570	6
571	4
572	6
573	5
574	2
575	5
576	2
577	7
578	1
579	1
580	1
581	4
582	5
583	5
584	4
585	9
586	7
587	3
588	6
589	2
590	2
591	2
592	2
593	3
594	2
595	2
596	4
597	2
598	3
599	1
600	4
601	4
602	6
603	3
604	3
605	1
606	5
607	4
608	2
609	8
610	1
611	4
612	1
613	6
614	4
615	5
616	5
617	2
618	5
619	1
620	1
621	3
622	3
623	3
624	2
625	3
626	5
628	2
629	2
630	2
631	1
632	2
633	3
634	3
635	2
636	4
637	10
638	5
639	4
640	1
641	2
642	4
643	2
644	1
645	4
646	2
647	3
648	2
649	5
650	3
652	3
653	4
654	1
655	2
656	2
657	4
658	3
659	7
660	2
661	3
662	3
663	2
664	3
665	1
666	5
668	3
669	1
670	1
671	3
672	4
673	4
674	2
675	3
676	1
678	5
679	3
680	1
681	3
682	1
683	1
684	3
685	1
686	2
687	4
688	9
689	4
691	1
692	2
693	2
694	1
695	1
696	2
697	1
698	3
699	4
700	5
701	1
702	4
704	3
705	4
707	2
708	2
709	3
710	2
711	2
712	5
713	1
714	1
715	2
716	2
717	3
718	1
719	4
720	4
721	3
722	3
724	1
726	2
727	2
728	1
729	2
730	1
731	4
732	2
733	3
734	3
735	2
736	2
737	1
738	1
740	1
741	2
742	4
743	2
744	4
745	2
746	3
748	3
749	2
750	4
751	2
752	2
753	1
754	1
756	1
757	3
758	3
760	1
761	2
762	2
763	1
764	3
766	2
767	2
768	1
769	2
772	2
773	1
774	2
775	3
776	2
777	3
778	2
779	3
780	1
781	1
782	2
783	1
784	2
787	2
788	2
789	1
790	3
792	3
793	3
794	2
795	2
797	2
800	1
801	1
803	1
804	1
805	2
806	2
807	1
809	3
812	3
814	1
816	2
818	1
819	3
821	1
823	1
826	1
827	2
829	2
830	1
831	1
832	1
833	1
834	1
835	3
836	2
837	3
838	3
839	1
841	2
842	1
843	2
844	1
845	1
846	1
847	1
849	1
851	1
853	4
854	2
858	1
859	1
860	2
861	2
862	1
864	2
867	2
868	2
869	3
870	1
871	1
872	1
873	1
875	1
876	1
877	2
878	1
879	3
880	1
881	1
882	1
883	5
884	1
885	1
888	1
889	2
891	1
892	2
894	2
896	1
897	1
899	1
900	2
903	1
905	2
906	2
907	4
908	2
913	1
914	2
915	2
916	3
918	2
920	1
921	3
924	1
930	2
932	2
933	1
934	3
936	2
942	1
944	1
946	1
949	4
951	1
953	1
955	1
956	1
957	1
958	2
959	2
960	2
962	1
963	2
964	1
965	2
966	1
967	1
968	3
970	1
974	1
975	1
976	1
978	4
979	1
980	1
985	4
986	2
987	3
988	2
991	1
993	2
994	2
997	1
999	1
1000	1
1001	1
1004	1
1006	1
1007	1
1009	1
1012	1
1013	1
1014	1
1015	1
1016	1
1017	1
1020	1
1021	1
1022	2
1023	1
1026	1
1029	1
1030	2
1032	1
1035	3
1037	1
1038	1
1039	1
1041	1
1042	1
1043	1
1044	1
1046	2
1047	2
1048	1
1049	1
1053	2
1056	1
1057	1
1060	2
1061	1
1065	1
1066	1
1067	1
1069	1
1072	2
1076	1
1079	1
1080	1
1086	1
1091	1
1092	1
1095	1
1098	1
1104	1
1105	1
1106	1
1107	1
1109	2
1110	1
1111	1
1115	1
1116	1
1118	1
1120	1
1126	1
1128	1
1131	1
1133	1
1135	1
1136	2
1143	1
1147	1
1148	1
1149	1
1152	1
1155	1
1157	1
1158	1
1162	1
1164	1
1173	1
1175	1
1178	1
1179	1
1184	1
1185	2
1191	1
1195	1
1201	1
1202	1
1203	2
1205	1
1206	2
1212	1
1214	1
1216	1
1218	1
1220	1
1222	2
1224	1
1228	1
1229	1
1230	1
1232	2
1235	2
1248	2
1249	1
1251	1
1252	1
1257	1
1258	1
1261	1
1262	1
1263	1
1266	1
1275	1
1276	1
1279	1
1285	1
1287	1
1288	1
1301	1
1302	1
1306	1
1313	1
1314	1
1323	2
1324	1
1325	1
1326	1
1328	1
1329	1
1334	1
1341	2
1343	1
1345	1
1346	1
1351	1
1354	1
1356	1
1359	2
1362	2
1363	1
1367	1
1375	1
1394	1
1399	1
1402	1
1404	1
1409	1
1411	1
1414	2
1426	1
1430	1
1443	1
1445	1
1456	1
1458	1
1472	1
1473	1
1476	1
1477	1
1481	1
1482	1
1484	1
1497	2
1502	1
1503	1
1505	1
1508	1
1514	1
1515	1
1547	1
1566	1
1569	1
1578	1
1580	1
1587	1
1589	1
1622	1
1645	1
1659	1
1684	1
1690	1
1700	1
1709	2
1710	1
1712	2
1740	1
1748	1
1753	2
1758	1
1759	1
1793	1
1795	1
1811	1
1841	1
1850	1
1878	1
1881	1
1900	1
1927	1
1936	1
1937	1
1945	1
1946	2
1947	1
1984	1
2000	1
2014	1
2052	1
2065	1
2076	1
2112	2
2140	1
2193	1
2226	1
2232	1
2250	1
2261	1
2286	1
2310	1
2343	1
2358	1
2367	1
2408	1
2448	1
2475	1
2480	1
2517	1
2588	1
2638	1
2801	2
2823	1
2830	1
2840	1
2902	1
2953	1
3004	1
3033	1
3320	1
3349	1
3588	1
3717	1
3818	1
3834	1
4289	1
4381	1
4557	1
5263	1
5377	1
6465	1
6652	1
10688	1
346784	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........_....._.._................._....._......._......_........._.....
...._...._............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]