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Filename
Quality_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L001/Reports/Quality_Metrics.csv
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Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:33 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 1 32315483575 30898675979 1263179577056 39.09 0.96
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 2 32315483575 30773887377 1261051383468 39.02 0.95
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 1 25616509760 24682467262 1006154812933 39.28 0.96
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 2 25616509760 24316086163 997742399233 38.95 0.95
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 1 19718970861 18957613302 773439359892 39.22 0.96
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 2 19718970861 18776125271 769306807373 39.01 0.95
1 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 1 12939180789 12296121993 504070863168 38.96 0.95
1 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 2 12939180789 12276407734 503932525279 38.95 0.95
1 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 1 7933986658 7487303962 307744550680 38.79 0.94
1 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 2 7933986658 7455561222 307302580959 38.73 0.94
1 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 1 11912874257 11107567040 458746481306 38.51 0.93
1 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 2 11912874257 11173185647 461073488747 38.70 0.94
1 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 1 9538373285 8907402125 367655002352 38.54 0.93
1 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 2 9538373285 8969619925 369636618706 38.75 0.94
1 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 1 9034402480 8445278740 348381811567 38.56 0.93
1 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 2 9034402480 8497641115 350149633921 38.76 0.94
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 1 23136098445 22118615515 903899532742 39.07 0.96
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 2 23136098445 21980989911 901542234225 38.97 0.95
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 1 21175427922 20412899639 831886236152 39.29 0.96
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 2 21175427922 20094092471 824534741501 38.94 0.95
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 1 18118504043 17378379740 709256751131 39.15 0.96
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 2 18118504043 17265416732 707165407034 39.03 0.95
1 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 1 15265370670 14400196725 591773161419 38.77 0.94
1 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 2 15265370670 14395206235 592491283696 38.81 0.94
1 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 1 10413718171 9767795706 402292266282 38.63 0.94
1 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 2 10413718171 9823244054 404220569258 38.82 0.94
1 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 1 9405931185 8824411016 363464220830 38.64 0.94
1 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 2 9405931185 8842594606 364415165404 38.74 0.94
1 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 1 3926407096 3594766035 149733291216 38.13 0.92
1 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 2 3926407096 3642155349 151119110676 38.49 0.93
1 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 1 13446735126 12638400790 520151800132 38.68 0.94
1 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 2 13446735126 12666527851 521577658540 38.79 0.94
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 1 22653862278 21664177626 885590961378 39.09 0.96
1 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 2 22653862278 21545766400 883148244568 38.98 0.95
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 1 19858137444 18963074571 775606307877 39.06 0.95
1 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 2 19858137444 18869562303 773785740510 38.97 0.95
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 1 20201543003 19287823126 788671631611 39.04 0.95
1 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 2 20201543003 19206947864 787422098363 38.98 0.95
1 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 1 7585251101 6541937517 280313100837 36.96 0.86
1 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 2 7585251101 6913893472 289370606758 38.15 0.91
1 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 1 10309396046 9764226100 401013628069 38.90 0.95
1 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 2 10309396046 9715609315 399933180289 38.79 0.94
1 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 1 8597219579 8201487165 335667513045 39.04 0.95
1 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 2 8597219579 8103992769 333429906570 38.78 0.94
1 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 1 7087571862 6763567896 276927653997 39.07 0.95
1 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 2 7087571862 6655708678 274444135081 38.72 0.94
1 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 1 24394956 15499102 780798340 32.01 0.64
1 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 2 24394956 20066882 893501303 36.63 0.82
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 1 14796065992 14139040624 578128348411 39.07 0.96
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 2 14796065992 14029370622 575837254959 38.92 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 1 11472368601 10915015782 447130069200 38.97 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 2 11472368601 10811831452 445010238553 38.79 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 1 10039681054 9486204404 389711324993 38.82 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 2 10039681054 9469455016 389691583528 38.82 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 1 9072831678 8564254262 351857388692 38.78 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 2 9072831678 8554656993 352076254896 38.81 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 1 9011706123 8524502047 350023100209 38.84 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 2 9011706123 8516633843 350111632283 38.85 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 1 9080553818 8609939343 353139570771 38.89 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 2 9080553818 8570330831 352563672518 38.83 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 1 9327516734 8812604510 362048323142 38.82 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 2 9327516734 8781267527 361595309642 38.77 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 1 7245278225 6797307250 280011641188 38.65 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 2 7245278225 6829220817 281118917373 38.80 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 1 16527372498 15746722770 644667937947 39.01 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 2 16527372498 15633667342 642425044036 38.87 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 1 12454060069 11918803961 487253155601 39.12 0.96
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 2 12454060069 11811592004 484733332160 38.92 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 1 10999267934 10446816945 428107210788 38.92 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 2 10999267934 10378658978 426987556262 38.82 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 1 8742276219 8218761951 338423375223 38.71 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 2 8742276219 8222907524 338745503138 38.75 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 1 9110717729 8553651117 352268831568 38.67 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 2 9110717729 8601926968 353751101533 38.83 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 1 9281814017 8872644170 362995124987 39.11 0.96
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 2 9281814017 8714303083 359421355732 38.72 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 1 9346953001 8791171268 361696163111 38.70 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 2 9346953001 8800989621 362389850592 38.77 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 1 7879870825 7392986277 304652877435 38.66 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 2 7879870825 7420399267 305556204016 38.78 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 1 11863061320 11274566807 462248851283 38.97 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 2 11863061320 11166525040 459930273322 38.77 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 1 10223473120 9603500227 395406805957 38.68 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 2 10223473120 9659980500 397161931365 38.85 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 1 10640969547 10057868809 413325032020 38.84 0.95
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 2 10640969547 10035130601 412965766901 38.81 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 1 9410694480 8824491704 363553002395 38.63 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 2 9410694480 8866629786 365024466012 38.79 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 1 6168152341 5812892792 238976391008 38.74 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 2 6168152341 5799422917 238945323589 38.74 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 1 7568523019 7091887240 292215466087 38.61 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 2 7568523019 7113355607 293190914987 38.74 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 1 8680485811 8291846940 339336396960 39.09 0.96
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 2 8680485811 8176781919 336643106460 38.78 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 1 9995146171 9411997640 386993534411 38.72 0.94
1 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 2 9995146171 9383798045 386878855664 38.71 0.94
1 Undetermined 1 31913255966 26825421612 1162326641610 36.42 0.84
1 Undetermined 2 31913255966 26082220984 1140453761104 35.74 0.82
99 rows