Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
1,FFPE_HD834_01_RNA_0001_23LGNLLT4_1,TAGCGAGGCT-TTGCTCACGG,214009825,209750863,4258962,0,0.0529,0.9801,0.0199,0.0000
1,FFPE_HD835_01_RNA_0001_23LGNLLT4_1,CCAACTGTAT-GCGCTAGAGA,169645760,165070926,4574834,0,0.0419,0.9730,0.0270,0.0000
1,FFPE_HD789_01_RNA_0002_23LGNLLT4_1,GAGTAGTGAC-GCGATGCCAA,130589211,127587683,3001528,0,0.0323,0.9770,0.0230,0.0000
1,tih_rna_sample_00017_23LGNLLT4_1,CCAGTATTCT-ACGAAGCGAT,85689939,83853214,1836725,0,0.0212,0.9786,0.0214,0.0000
1,tih_rna_sample_00038_23LGNLLT4_1,ATCATACCGC-ATGTCGTACT,52542958,51370029,1172929,0,0.0130,0.9777,0.0223,0.0000
1,tih_rna_sample_00067_23LGNLLT4_1,ATTCGCACTA-TCTGTATGGT,78893207,77337350,1555857,0,0.0195,0.9803,0.0197,0.0000
1,tih_rna_sample_00142_23LGNLLT4_1,CTCTTCAGCA-TTGTCTCTAC,63168035,61724842,1443193,0,0.0156,0.9772,0.0228,0.0000
1,tih_rna_sample_00143_23LGNLLT4_1,CTGTATGCCA-TTCCGGCTGT,59830480,58668381,1162099,0,0.0148,0.9806,0.0194,0.0000
1,FFPE_HD834_01_RNA_0001_23LGNLLT4_2,TCTGACTATG-TAACCAGATC,153219195,150301295,2917900,0,0.0379,0.9810,0.0190,0.0000
1,FFPE_HD835_01_RNA_0001_23LGNLLT4_2,TGTGACGTAT-GCAGCGTTAG,140234622,137309337,2925285,0,0.0347,0.9791,0.0209,0.0000
1,FFPE_HD789_01_RNA_0002_23LGNLLT4_2,AGAAGATTGG-AGAAGGTACT,119990093,117095243,2894850,0,0.0297,0.9759,0.0241,0.0000
1,tih_rna_sample_00144_23LGNLLT4_1,ATCCAGCATG-AGAGCTCTAC,101095170,98590655,2504515,0,0.0250,0.9752,0.0248,0.0000
1,tih_rna_sample_00270_23LGNLLT4_1,GCGCCATATA-GAACCTCCTA,68965021,67278220,1686801,0,0.0170,0.9755,0.0245,0.0000
1,tih_rna_sample_00276_23LGNLLT4_1,CACTCGCATA-GAACGCGACA,62290935,60842556,1448379,0,0.0154,0.9767,0.0233,0.0000
1,tih_rna_sample_00346_23LGNLLT4_1,AAGGTCAATG-GCATTATAGG,26002696,25435402,567294,0,0.0064,0.9782,0.0218,0.0000
1,tih_rna_sample_00357_23LGNLLT4_1,GTGACGCACA-CGTTGTTGCG,89051226,86880996,2170230,0,0.0220,0.9756,0.0244,0.0000
1,FFPE_HD834_01_RNA_0001_23LGNLLT4_3,TGTCAGGCTT-GATTCCTTAC,150025578,147000783,3024795,0,0.0371,0.9798,0.0202,0.0000
1,FFPE_HD835_01_RNA_0001_23LGNLLT4_3,CACGTGATGG-TACAACGTGT,131510844,128340740,3170104,0,0.0325,0.9759,0.0241,0.0000
1,FFPE_HD789_01_RNA_0002_23LGNLLT4_3,CCATCACGTG-TCTCCTGGTT,133785053,129758017,4027036,0,0.0331,0.9699,0.0301,0.0000
1,tih_rna_sample_00401_23LGNLLT4_1,ACCAGGAATT-AGCATGGCAT,50233451,48898961,1334490,0,0.0124,0.9734,0.0266,0.0000
1,tih_rna_sample_00375_23LGNLLT4_1,TAAGGCTCAC-GACGTTACTT,68274146,66748724,1525422,0,0.0169,0.9777,0.0223,0.0000
1,tih_rna_sample_00423_23LGNLLT4_1,TGGCACTGAT-GCCATAGAAT,56935229,55686143,1249086,0,0.0141,0.9781,0.0219,0.0000
1,tih_rna_sample_00417_23LGNLLT4_1,CATATGGTGC-ACAGATCTCA,46937562,45936703,1000859,0,0.0116,0.9787,0.0213,0.0000
1,NTC_0001_0001_23LGNLLT4_2,GCACTACCAG-GAAGACTTAG,161556,157065,4491,0,0.0000,0.9722,0.0278,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1,GCATAAGATC-GAGAACTGGA,97987192,95406835,2580357,0,0.0242,0.9737,0.0263,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2,AAGGTGTACT-AGCGCTACAG,75975951,74154854,1821097,0,0.0188,0.9760,0.0240,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3,CTTCTAACCG-TGATCAGTCT,66487954,65079383,1408571,0,0.0164,0.9788,0.0212,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4,TCGACCAGCA-GTTCGAACTC,60084978,58738403,1346575,0,0.0148,0.9776,0.0224,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5,GTGACACGTC-CTTACACTGA,59680173,58424907,1255266,0,0.0147,0.9790,0.0210,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6,AATGGACGCG-AAGTGCACCG,60136118,58462546,1673572,0,0.0149,0.9722,0.0278,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7,TCTCCGTACT-AGTTGTGATC,61771634,60432803,1338831,0,0.0153,0.9783,0.0217,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8,TGGAAGCACA-TCCAACACCG,47981975,46862850,1119125,0,0.0119,0.9767,0.0233,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9,GATAGACAAC-GTGTTCACGT,109452798,107127858,2324940,0,0.0270,0.9788,0.0212,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10,AGCGTCTCAT-CCTAGGCGAT,82477219,76488590,5988629,0,0.0204,0.9274,0.0726,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11,CTCTATACTG-CGTTCAACCG,72842834,70658148,2184686,0,0.0180,0.9700,0.0300,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12,ATAGCCGGTT-TCTTATCCGG,57895869,56390524,1505345,0,0.0143,0.9740,0.0260,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13,GTTCTCATCA-CCTCCATTCT,60335879,59043869,1292010,0,0.0149,0.9786,0.0214,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14,CAATGCGTGT-ATGTTCGCGC,61468967,59965437,1503530,0,0.0152,0.9755,0.0245,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15,TGAGTGTACA-ATTCGCCGGT,61900351,60181633,1718718,0,0.0153,0.9722,0.0278,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16,TGCTTCCAAG-CAGATGTTAC,52184575,51070693,1113882,0,0.0129,0.9787,0.0213,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17,CCTACTCTGC-TGCAATTGGC,78563320,77083038,1480282,0,0.0194,0.9812,0.0188,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18,TCGCTGAGAG-AATGCTCTAG,67705120,65746016,1959104,0,0.0167,0.9711,0.0289,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19,CGCTAATTGC-CCATCGCATT,70469997,68914332,1555665,0,0.0174,0.9779,0.0221,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20,TCAGCTGTCA-ACAGCTCCTG,62322480,60901739,1420741,0,0.0154,0.9772,0.0228,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21,AGACGACAGA-GAGCTGGAAT,40848691,39708970,1139721,0,0.0101,0.9721,0.0279,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22,TAGGTCCAGA-TGCTCATCCG,50122669,47082367,3040302,0,0.0124,0.9393,0.0607,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23,TAACCTGAAC-TCAATTGACG,57486661,56305868,1180793,0,0.0142,0.9795,0.0205,0.0000
1,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24,GATAGGTGAA-AGACGCAAGA,66193021,64140171,2052850,0,0.0164,0.9690,0.0310,0.0000
1,Undetermined,,211346066,211346066,0,0,0.0522,1.0000,0.0000,0.0000