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Filename
Quality_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L002/Reports/Quality_Metrics.csv
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10.4 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:35 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 1 32119907922 30765309962 1256191741670 39.11 0.96
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 2 32119907922 30588315638 1252921514312 39.01 0.95
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 1 25137099105 24258581788 987705027271 39.29 0.97
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 2 25137099105 23861507178 978690727989 38.93 0.95
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 1 19652044188 18925516534 771188733391 39.24 0.96
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 2 19652044188 18712753099 766397061046 39.00 0.95
2 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 1 12787043608 12177424163 498507492362 38.99 0.95
2 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 2 12787043608 12132679651 497805886744 38.93 0.95
2 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 1 7867970666 7441243561 305432301583 38.82 0.95
2 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 2 7867970666 7394863797 304644530232 38.72 0.94
2 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 1 11802475741 11027327495 454789637249 38.53 0.93
2 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 2 11802475741 11071825182 456645916128 38.69 0.94
2 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 1 9471286401 8862098951 365270265110 38.57 0.94
2 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 2 9471286401 8907074586 366883486425 38.74 0.94
2 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 1 8900812931 8336145412 343395606388 38.58 0.94
2 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 2 8900812931 8374310803 344872572502 38.75 0.94
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 1 22748866495 21779422159 889037752309 39.08 0.96
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 2 22748866495 21615516356 886143802478 38.95 0.95
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 1 20903770013 20183935962 821556538572 39.30 0.97
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 2 20903770013 19840399785 813721007778 38.93 0.95
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 1 18094030718 17376509222 708451223768 39.15 0.96
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 2 18094030718 17243077348 705949846984 39.02 0.95
2 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 1 14851365363 14032892648 575956484936 38.78 0.94
2 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 2 14851365363 14004178240 576148654585 38.79 0.94
2 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 1 10337326969 9714402206 399560307821 38.65 0.94
2 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 2 10337326969 9750402941 401063594942 38.80 0.94
2 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 1 9340622477 8780640225 361160897058 38.67 0.94
2 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 2 9340622477 8782702840 361761102394 38.73 0.94
2 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 1 3859484953 3541970062 147306285151 38.17 0.92
2 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 2 3859484953 3575593094 148385581166 38.45 0.93
2 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 1 13319152659 12539176222 515399519389 38.70 0.94
2 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 2 13319152659 12549313692 516470538999 38.78 0.94
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 1 22408752283 21467431070 876476771231 39.11 0.96
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 2 22408752283 21313301485 873250127881 38.97 0.95
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 1 19607502661 18754059877 766179100711 39.08 0.96
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 2 19607502661 18633274843 763752388222 38.95 0.95
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 1 20100164019 19217928965 784967145113 39.05 0.96
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 2 20100164019 19112334308 783191927678 38.96 0.95
2 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 1 7423201072 6428613354 274831850406 37.02 0.87
2 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 2 7423201072 6759371371 282903028591 38.11 0.91
2 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 1 10244162234 9727562854 398879526940 38.94 0.95
2 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 2 10244162234 9654159675 397230897018 38.78 0.94
2 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 1 8521313238 8144245228 332892681583 39.07 0.96
2 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 2 8521313238 8033379659 330369820844 38.77 0.94
2 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 1 6976263420 6674167562 272830731347 39.11 0.96
2 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 2 6976263420 6548450524 269960066299 38.70 0.94
2 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 1 23764833 15255320 763440578 32.12 0.64
2 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 2 23764833 19001674 859224001 36.16 0.80
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 1 14777868529 14145330475 577699672927 39.09 0.96
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 2 14777868529 14013932134 574929901279 38.90 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 1 11216782226 10691855548 437433820510 39.00 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 2 11216782226 10573852970 434975202515 38.78 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 1 9894707162 9363995489 384213551534 38.83 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 2 9894707162 9333548915 383921960174 38.80 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 1 9051703154 8557716217 351155412082 38.79 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 2 9051703154 8536003213 351137311378 38.79 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 1 8923326125 8457016146 346803948801 38.86 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 2 8923326125 8433731333 346544505818 38.84 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 1 8970702224 8517616093 348945584374 38.90 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 2 8970702224 8467087907 348162249599 38.81 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 1 9158586390 8670840531 355748253657 38.84 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 2 9158586390 8622613072 354899153866 38.75 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 1 7194684769 6761470552 278159501026 38.66 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 2 7194684769 6782177134 279047779300 38.79 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 1 16419674013 15673291769 640871588501 39.03 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 2 16419674013 15535613955 638054740503 38.86 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 1 12309444349 11801945599 481858143844 39.15 0.96
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 2 12309444349 11673599213 478889044724 38.90 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 1 10791334743 10263705614 420119454248 38.93 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 2 10791334743 10183771468 418764828625 38.81 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 1 8603017828 8104675586 333274481039 38.74 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 2 8603017828 8091668842 333196911850 38.73 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 1 9043341378 8506963165 349876005583 38.69 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 2 9043341378 8539473422 351011755793 38.81 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 1 9074844357 8693902330 355162084231 39.14 0.96
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 2 9074844357 8519018989 351232649770 38.70 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 1 9182663491 8650751882 355461724862 38.71 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 2 9182663491 8647313873 355888687349 38.76 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 1 7745668518 7281275784 299656819245 38.69 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 2 7745668518 7294578742 300236567080 38.76 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 1 11811353635 11251575461 460641576542 39.00 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 2 11811353635 11119052615 457752245603 38.76 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 1 10075755860 9481666265 389904800156 38.70 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 2 10075755860 9519146985 391229642814 38.83 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 1 10520229796 9967558093 409021676728 38.88 0.95
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 2 10520229796 9921955782 408126064341 38.79 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 1 9252410844 8692880899 357658485979 38.66 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 2 9252410844 8718195257 358745688176 38.77 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 1 6098785357 5755210638 236331002535 38.75 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 2 6098785357 5735895698 236194655033 38.73 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 1 7499000807 7039345358 289669742732 38.63 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 2 7499000807 7048666172 290385008357 38.72 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 1 8594782590 8228146314 336237149919 39.12 0.96
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 2 8594782590 8096420542 333183636649 38.77 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 1 9903540058 9342095156 383636111873 38.74 0.94
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 2 9903540058 9298290767 383169813821 38.69 0.94
2 Undetermined 1 32254320874 27484680740 1182952797113 36.68 0.85
2 Undetermined 2 32254320874 26843928408 1163605132050 36.08 0.83
99 rows