File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L002/Reports/Demultiplex_Stats.csv
Size
5.7 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:35 PM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT-TTGCTCACGG 212714622 205453478 7261144 0 0.0531 0.9659 0.0341 0.0000
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT-GCGCTAGAGA 166470855 159620526 6850329 0 0.0416 0.9588 0.0412 0.0000
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC-GCGATGCCAA 130145988 125379352 4766636 0 0.0325 0.9634 0.0366 0.0000
2 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT-ACGAAGCGAT 84682408 81723568 2958840 0 0.0211 0.9651 0.0349 0.0000
2 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC-ATGTCGTACT 52105766 50224462 1881304 0 0.0130 0.9639 0.0361 0.0000
2 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA-TCTGTATGGT 78162091 75467903 2694188 0 0.0195 0.9655 0.0345 0.0000
2 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA-TTGTCTCTAC 62723751 60451597 2272154 0 0.0157 0.9638 0.0362 0.0000
2 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA-TTCCGGCTGT 58945781 56957207 1988574 0 0.0147 0.9663 0.0337 0.0000
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG-TAACCAGATC 150654745 145634722 5020023 0 0.0376 0.9667 0.0333 0.0000
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT-GCAGCGTTAG 138435563 133603609 4831954 0 0.0346 0.9651 0.0349 0.0000
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG-AGAAGGTACT 119828018 115309903 4518115 0 0.0299 0.9623 0.0377 0.0000
2 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG-AGAGCTCTAC 98353413 94250162 4103251 0 0.0246 0.9583 0.0417 0.0000
2 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA-GAACCTCCTA 68459119 65798047 2661072 0 0.0171 0.9611 0.0389 0.0000
2 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA-GAACGCGACA 61858427 59536146 2322281 0 0.0154 0.9625 0.0375 0.0000
2 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG-GCATTATAGG 25559503 24652255 907248 0 0.0064 0.9645 0.0355 0.0000
2 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA-CGTTGTTGCG 88206309 84801615 3404694 0 0.0220 0.9614 0.0386 0.0000
2 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT-GATTCCTTAC 148402333 143216103 5186230 0 0.0370 0.9651 0.0349 0.0000
2 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG-TACAACGTGT 129851011 125005748 4845263 0 0.0324 0.9627 0.0373 0.0000
2 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG-TCTCCTGGTT 133113669 127420590 5693079 0 0.0332 0.9572 0.0428 0.0000
2 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT-AGCATGGCAT 49160272 47209123 1951149 0 0.0123 0.9603 0.0397 0.0000
2 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC-GACGTTACTT 67842134 65364917 2477217 0 0.0169 0.9635 0.0365 0.0000
2 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT-GCCATAGAAT 56432538 54417933 2014605 0 0.0141 0.9643 0.0357 0.0000
2 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC-ACAGATCTCA 46200420 44523430 1676990 0 0.0115 0.9637 0.0363 0.0000
2 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG-GAAGACTTAG 157383 151043 6340 0 0.0000 0.9597 0.0403 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC-GAGAACTGGA 97866679 93881397 3985282 0 0.0244 0.9593 0.0407 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT-AGCGCTACAG 74283326 71454339 2828987 0 0.0185 0.9619 0.0381 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG-TGATCAGTCT 65527862 63218087 2309775 0 0.0164 0.9648 0.0352 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA-GTTCGAACTC 59945054 57750575 2194479 0 0.0150 0.9634 0.0366 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC-CTTACACTGA 59094875 56993438 2101437 0 0.0148 0.9644 0.0356 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG-AAGTGCACCG 59408624 57019837 2388787 0 0.0148 0.9598 0.0402 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT-AGTTGTGATC 60652890 58473787 2179103 0 0.0151 0.9641 0.0359 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA-TCCAACACCG 47646919 45860278 1786641 0 0.0119 0.9625 0.0375 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC-GTGTTCACGT 108739563 104876597 3862966 0 0.0271 0.9645 0.0355 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT-CCTAGGCGAT 81519499 75062618 6456881 0 0.0204 0.9208 0.0792 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG-CGTTCAACCG 71465793 68351134 3114659 0 0.0178 0.9564 0.0436 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT-TCTTATCCGG 56973628 54732584 2241044 0 0.0142 0.9607 0.0393 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA-CCTCCATTCT 59889678 57720586 2169092 0 0.0150 0.9638 0.0362 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT-ATGTTCGCGC 60098307 57824319 2273988 0 0.0150 0.9622 0.0378 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA-ATTCGCCGGT 60812341 58310324 2502017 0 0.0152 0.9589 0.0411 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG-CAGATGTTAC 51295818 49516601 1779217 0 0.0128 0.9653 0.0347 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC-TGCAATTGGC 78220885 75576761 2644124 0 0.0195 0.9662 0.0338 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG-AATGCTCTAG 66726860 63906162 2820698 0 0.0167 0.9577 0.0423 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC-CCATCGCATT 69670396 67197833 2472563 0 0.0174 0.9645 0.0355 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA-ACAGCTCCTG 61274244 59000789 2273455 0 0.0153 0.9629 0.0371 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA-GAGCTGGAAT 40389307 38761704 1627603 0 0.0101 0.9597 0.0403 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA-TGCTCATCCG 49662257 46348941 3313316 0 0.0124 0.9333 0.0667 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC-TCAATTGACG 56919090 54929740 1989350 0 0.0142 0.9650 0.0350 0.0000
2 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA-AGACGCAAGA 65586358 62679375 2906983 0 0.0164 0.9557 0.0443 0.0000
2 Undetermined 213604774 213604774 0 0 0.0533 1.0000 0.0000 0.0000
50 rows