Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
2,FFPE_HD834_01_RNA_0001_23LGNLLT4_1,TAGCGAGGCT-TTGCTCACGG,212714622,205453478,7261144,0,0.0531,0.9659,0.0341,0.0000
2,FFPE_HD835_01_RNA_0001_23LGNLLT4_1,CCAACTGTAT-GCGCTAGAGA,166470855,159620526,6850329,0,0.0416,0.9588,0.0412,0.0000
2,FFPE_HD789_01_RNA_0002_23LGNLLT4_1,GAGTAGTGAC-GCGATGCCAA,130145988,125379352,4766636,0,0.0325,0.9634,0.0366,0.0000
2,tih_rna_sample_00017_23LGNLLT4_1,CCAGTATTCT-ACGAAGCGAT,84682408,81723568,2958840,0,0.0211,0.9651,0.0349,0.0000
2,tih_rna_sample_00038_23LGNLLT4_1,ATCATACCGC-ATGTCGTACT,52105766,50224462,1881304,0,0.0130,0.9639,0.0361,0.0000
2,tih_rna_sample_00067_23LGNLLT4_1,ATTCGCACTA-TCTGTATGGT,78162091,75467903,2694188,0,0.0195,0.9655,0.0345,0.0000
2,tih_rna_sample_00142_23LGNLLT4_1,CTCTTCAGCA-TTGTCTCTAC,62723751,60451597,2272154,0,0.0157,0.9638,0.0362,0.0000
2,tih_rna_sample_00143_23LGNLLT4_1,CTGTATGCCA-TTCCGGCTGT,58945781,56957207,1988574,0,0.0147,0.9663,0.0337,0.0000
2,FFPE_HD834_01_RNA_0001_23LGNLLT4_2,TCTGACTATG-TAACCAGATC,150654745,145634722,5020023,0,0.0376,0.9667,0.0333,0.0000
2,FFPE_HD835_01_RNA_0001_23LGNLLT4_2,TGTGACGTAT-GCAGCGTTAG,138435563,133603609,4831954,0,0.0346,0.9651,0.0349,0.0000
2,FFPE_HD789_01_RNA_0002_23LGNLLT4_2,AGAAGATTGG-AGAAGGTACT,119828018,115309903,4518115,0,0.0299,0.9623,0.0377,0.0000
2,tih_rna_sample_00144_23LGNLLT4_1,ATCCAGCATG-AGAGCTCTAC,98353413,94250162,4103251,0,0.0246,0.9583,0.0417,0.0000
2,tih_rna_sample_00270_23LGNLLT4_1,GCGCCATATA-GAACCTCCTA,68459119,65798047,2661072,0,0.0171,0.9611,0.0389,0.0000
2,tih_rna_sample_00276_23LGNLLT4_1,CACTCGCATA-GAACGCGACA,61858427,59536146,2322281,0,0.0154,0.9625,0.0375,0.0000
2,tih_rna_sample_00346_23LGNLLT4_1,AAGGTCAATG-GCATTATAGG,25559503,24652255,907248,0,0.0064,0.9645,0.0355,0.0000
2,tih_rna_sample_00357_23LGNLLT4_1,GTGACGCACA-CGTTGTTGCG,88206309,84801615,3404694,0,0.0220,0.9614,0.0386,0.0000
2,FFPE_HD834_01_RNA_0001_23LGNLLT4_3,TGTCAGGCTT-GATTCCTTAC,148402333,143216103,5186230,0,0.0370,0.9651,0.0349,0.0000
2,FFPE_HD835_01_RNA_0001_23LGNLLT4_3,CACGTGATGG-TACAACGTGT,129851011,125005748,4845263,0,0.0324,0.9627,0.0373,0.0000
2,FFPE_HD789_01_RNA_0002_23LGNLLT4_3,CCATCACGTG-TCTCCTGGTT,133113669,127420590,5693079,0,0.0332,0.9572,0.0428,0.0000
2,tih_rna_sample_00401_23LGNLLT4_1,ACCAGGAATT-AGCATGGCAT,49160272,47209123,1951149,0,0.0123,0.9603,0.0397,0.0000
2,tih_rna_sample_00375_23LGNLLT4_1,TAAGGCTCAC-GACGTTACTT,67842134,65364917,2477217,0,0.0169,0.9635,0.0365,0.0000
2,tih_rna_sample_00423_23LGNLLT4_1,TGGCACTGAT-GCCATAGAAT,56432538,54417933,2014605,0,0.0141,0.9643,0.0357,0.0000
2,tih_rna_sample_00417_23LGNLLT4_1,CATATGGTGC-ACAGATCTCA,46200420,44523430,1676990,0,0.0115,0.9637,0.0363,0.0000
2,NTC_0001_0001_23LGNLLT4_2,GCACTACCAG-GAAGACTTAG,157383,151043,6340,0,0.0000,0.9597,0.0403,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1,GCATAAGATC-GAGAACTGGA,97866679,93881397,3985282,0,0.0244,0.9593,0.0407,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2,AAGGTGTACT-AGCGCTACAG,74283326,71454339,2828987,0,0.0185,0.9619,0.0381,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3,CTTCTAACCG-TGATCAGTCT,65527862,63218087,2309775,0,0.0164,0.9648,0.0352,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4,TCGACCAGCA-GTTCGAACTC,59945054,57750575,2194479,0,0.0150,0.9634,0.0366,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5,GTGACACGTC-CTTACACTGA,59094875,56993438,2101437,0,0.0148,0.9644,0.0356,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6,AATGGACGCG-AAGTGCACCG,59408624,57019837,2388787,0,0.0148,0.9598,0.0402,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7,TCTCCGTACT-AGTTGTGATC,60652890,58473787,2179103,0,0.0151,0.9641,0.0359,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8,TGGAAGCACA-TCCAACACCG,47646919,45860278,1786641,0,0.0119,0.9625,0.0375,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9,GATAGACAAC-GTGTTCACGT,108739563,104876597,3862966,0,0.0271,0.9645,0.0355,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10,AGCGTCTCAT-CCTAGGCGAT,81519499,75062618,6456881,0,0.0204,0.9208,0.0792,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11,CTCTATACTG-CGTTCAACCG,71465793,68351134,3114659,0,0.0178,0.9564,0.0436,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12,ATAGCCGGTT-TCTTATCCGG,56973628,54732584,2241044,0,0.0142,0.9607,0.0393,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13,GTTCTCATCA-CCTCCATTCT,59889678,57720586,2169092,0,0.0150,0.9638,0.0362,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14,CAATGCGTGT-ATGTTCGCGC,60098307,57824319,2273988,0,0.0150,0.9622,0.0378,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15,TGAGTGTACA-ATTCGCCGGT,60812341,58310324,2502017,0,0.0152,0.9589,0.0411,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16,TGCTTCCAAG-CAGATGTTAC,51295818,49516601,1779217,0,0.0128,0.9653,0.0347,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17,CCTACTCTGC-TGCAATTGGC,78220885,75576761,2644124,0,0.0195,0.9662,0.0338,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18,TCGCTGAGAG-AATGCTCTAG,66726860,63906162,2820698,0,0.0167,0.9577,0.0423,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19,CGCTAATTGC-CCATCGCATT,69670396,67197833,2472563,0,0.0174,0.9645,0.0355,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20,TCAGCTGTCA-ACAGCTCCTG,61274244,59000789,2273455,0,0.0153,0.9629,0.0371,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21,AGACGACAGA-GAGCTGGAAT,40389307,38761704,1627603,0,0.0101,0.9597,0.0403,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22,TAGGTCCAGA-TGCTCATCCG,49662257,46348941,3313316,0,0.0124,0.9333,0.0667,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23,TAACCTGAAC-TCAATTGACG,56919090,54929740,1989350,0,0.0142,0.9650,0.0350,0.0000
2,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24,GATAGGTGAA-AGACGCAAGA,65586358,62679375,2906983,0,0.0164,0.9557,0.0443,0.0000
2,Undetermined,,213604774,213604774,0,0,0.0533,1.0000,0.0000,0.0000