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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L007/Reports/Quality_Metrics.csv
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Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:38 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
7 tih_rna_sample_00341_23LGNLLT4_1 TTGGATTGTC CGGCTGTTAG 1 11067698869 10491869369 430133361722 38.86 0.95
7 tih_rna_sample_00341_23LGNLLT4_1 TTGGATTGTC CGGCTGTTAG 2 11067698869 10504759380 430866375609 38.93 0.95
7 NTC_0001_0001_23LGNLLT4_1 AATTGGCACA CAGTCGGAGT 1 127493830 81390981 4085484243 32.04 0.64
7 NTC_0001_0001_23LGNLLT4_1 AATTGGCACA CAGTCGGAGT 2 127493830 105440942 4685371988 36.75 0.83
7 tih_rna_sample_00344_23LGNLLT4_1 AGGCAATCGC ATGAGTCTGT 1 8090062825 7731328591 316008760420 39.06 0.96
7 tih_rna_sample_00344_23LGNLLT4_1 AGGCAATCGC ATGAGTCTGT 2 8090062825 7720173198 315909749562 39.05 0.95
7 tih_rna_sample_00345_23LGNLLT4_1 TGCAACACTA CGTTCTGGTA 1 14494047872 13602025334 559951671473 38.63 0.94
7 tih_rna_sample_00345_23LGNLLT4_1 TGCAACACTA CGTTCTGGTA 2 14494047872 13750067879 564287911700 38.93 0.95
7 tih_rna_sample_00347_23LGNLLT4_1 GAATCGCCTG CATTGACGGC 1 16779341517 16103818224 656867105472 39.15 0.96
7 tih_rna_sample_00347_23LGNLLT4_1 GAATCGCCTG CATTGACGGC 2 16779341517 16016298964 655417843747 39.06 0.95
7 tih_rna_sample_00298_23LGNLLT4_1 TCGCATGACA TTGGCCAATG 1 15754206745 15118609155 616532325525 39.13 0.96
7 tih_rna_sample_00298_23LGNLLT4_1 TCGCATGACA TTGGCCAATG 2 15754206745 15043146677 615498825884 39.07 0.95
7 tih_rna_sample_00348_23LGNLLT4_1 TCAATACGTG GCTGCTAATA 1 16624680975 15898803805 649354438198 39.06 0.96
7 tih_rna_sample_00348_23LGNLLT4_1 TCAATACGTG GCTGCTAATA 2 16624680975 15870032732 649302245474 39.06 0.95
7 tih_rna_sample_00354_23LGNLLT4_1 ATTCTCCACG TCGATGATCG 1 7373356123 6714234717 280182609714 38.00 0.91
7 tih_rna_sample_00354_23LGNLLT4_1 ATTCTCCACG TCGATGATCG 2 7373356123 6899064971 285011219594 38.65 0.94
7 tih_rna_sample_00477_23LGNLLT4_1 TGTTACAGAG TGTGTACCAG 1 19311187811 18569431098 756667571154 39.18 0.96
7 tih_rna_sample_00477_23LGNLLT4_1 TGTTACAGAG TGTGTACCAG 2 19311187811 18502695076 755775879970 39.14 0.96
7 tih_rna_sample_00355_23LGNLLT4_1 TTACGGACGC ATTGGCCAGC 1 16269563705 15608540376 637155209928 39.16 0.96
7 tih_rna_sample_00355_23LGNLLT4_1 TTACGGACGC ATTGGCCAGC 2 16269563705 15464768285 634098946268 38.97 0.95
7 tih_rna_sample_00358_23LGNLLT4_1 CCAATGTTGA CTTGAATGTC 1 10849729010 10167718149 418829586954 38.60 0.94
7 tih_rna_sample_00358_23LGNLLT4_1 CCAATGTTGA CTTGAATGTC 2 10849729010 10275635785 422028665614 38.90 0.95
7 tih_rna_sample_00303_23LGNLLT4_1 CGTACTTAGA CCGATGTTCA 1 12560290532 11962579705 489352566709 38.96 0.95
7 tih_rna_sample_00303_23LGNLLT4_1 CGTACTTAGA CCGATGTTCA 2 12560290532 12009367668 491003069427 39.09 0.96
7 tih_rna_sample_00360_23LGNLLT4_1 GCCGTGAACA GCACCACCAT 1 8256950743 7954720746 323953832076 39.23 0.96
7 tih_rna_sample_00360_23LGNLLT4_1 GCCGTGAACA GCACCACCAT 2 8256950743 7873605828 322281060759 39.03 0.95
7 tih_rna_sample_00566_23LGNLLT4_1 AGGAGACCAC TACCACGTAG 1 18658690084 17951767328 731677935062 39.21 0.96
7 tih_rna_sample_00566_23LGNLLT4_1 AGGAGACCAC TACCACGTAG 2 18658690084 17864820545 729962807081 39.12 0.96
7 tih_rna_sample_00483_23LGNLLT4_1 GAAGCAAGCG TCACCGACTA 1 11491322121 11025321465 449807986305 39.14 0.96
7 tih_rna_sample_00483_23LGNLLT4_1 GAAGCAAGCG TCACCGACTA 2 11491322121 10939932136 448129521358 39.00 0.95
7 tih_rna_sample_00307_23LGNLLT4_1 AACGCGACTG GACCTACGAG 1 11497172314 10983228549 448887839226 39.04 0.96
7 tih_rna_sample_00307_23LGNLLT4_1 AACGCGACTG GACCTACGAG 2 11497172314 10991074325 449505017570 39.10 0.96
7 tih_rna_sample_00485_23LGNLLT4_1 TTCGCGGACT AGAGAGTGGT 1 18049942342 17387574129 708367956123 39.24 0.96
7 tih_rna_sample_00485_23LGNLLT4_1 TTCGCGGACT AGAGAGTGGT 2 18049942342 16984218543 698710559388 38.71 0.94
7 tih_rna_sample_00308_23LGNLLT4_1 TCGTGACGAC GTGACTAACT 1 10340525904 9794179808 402233632817 38.90 0.95
7 tih_rna_sample_00308_23LGNLLT4_1 TCGTGACGAC GTGACTAACT 2 10340525904 9820865117 402881992361 38.96 0.95
7 tih_rna_sample_00309_23LGNLLT4_1 TCAATCTAGC TCCGAATAAG 1 16222769409 15588580918 635461568941 39.17 0.96
7 tih_rna_sample_00309_23LGNLLT4_1 TCAATCTAGC TCCGAATAAG 2 16222769409 15561782829 635283934035 39.16 0.96
7 tih_rna_sample_00487_23LGNLLT4_1 GCGGAGTCAA CTCTATAGCT 1 5828118461 5487904124 225717783320 38.73 0.94
7 tih_rna_sample_00487_23LGNLLT4_1 GCGGAGTCAA CTCTATAGCT 2 5828118461 5499900933 226218305820 38.81 0.94
7 tih_rna_sample_00494_23LGNLLT4_1 GATGCTAGAA TGGATGCCAG 1 8661379177 8158493230 335392212211 38.72 0.94
7 tih_rna_sample_00494_23LGNLLT4_1 GATGCTAGAA TGGATGCCAG 2 8661379177 8209055164 337012275289 38.91 0.95
7 tih_rna_sample_00499_23LGNLLT4_1 ACGATGGTTA AATTGCTAGG 1 25196438934 24411423673 991623632695 39.36 0.97
7 tih_rna_sample_00499_23LGNLLT4_1 ACGATGGTTA AATTGCTAGG 2 25196438934 24231960526 988069894483 39.21 0.96
7 tih_rna_sample_00500_23LGNLLT4_1 AGAGCAGTAT CAAGAGGAGG 1 22647112125 21987605080 892882355641 39.43 0.97
7 tih_rna_sample_00500_23LGNLLT4_1 AGAGCAGTAT CAAGAGGAGG 2 22647112125 21746569893 887380428693 39.18 0.96
7 tih_rna_sample_00501_23LGNLLT4_1 TTGTGATCCT ATGAAGGCAT 1 20837709778 20055014847 817296032310 39.22 0.96
7 tih_rna_sample_00501_23LGNLLT4_1 TTGTGATCCT ATGAAGGCAT 2 20837709778 19892884498 813829309888 39.06 0.95
7 tih_rna_sample_00452_23LGNLLT4_1 TAAGATCGGA TTCATCCGTG 1 20554426681 19510079833 799218849751 38.88 0.95
7 tih_rna_sample_00452_23LGNLLT4_1 TAAGATCGGA TTCATCCGTG 2 20554426681 19667316828 803879725392 39.11 0.96
7 tih_rna_sample_00505_23LGNLLT4_1 TTAGTTGCTG ATGGCGGATT 1 7211297638 6576856322 274198380575 38.02 0.91
7 tih_rna_sample_00505_23LGNLLT4_1 TTAGTTGCTG ATGGCGGATT 2 7211297638 6780374361 279528440262 38.76 0.94
7 tih_rna_sample_00508_23LGNLLT4_1 AGTCAGATGC CTCACACACT 1 13835888249 13271683266 541733016294 39.15 0.96
7 tih_rna_sample_00508_23LGNLLT4_1 AGTCAGATGC CTCACACACT 2 13835888249 13229004682 540924551047 39.10 0.96
7 tih_rna_sample_00312_23LGNLLT4_1 AGTACAACTG CATTGAGTTC 1 15640279963 14393177208 597692044476 38.21 0.92
7 tih_rna_sample_00312_23LGNLLT4_1 AGTACAACTG CATTGAGTTC 2 15640279963 14704611419 606044031455 38.75 0.94
7 tih_rna_sample_00509_23LGNLLT4_1 CTTAGTACGC GCTACAACGA 1 20012040419 19330768828 786556522558 39.30 0.97
7 tih_rna_sample_00509_23LGNLLT4_1 CTTAGTACGC GCTACAACGA 2 20012040419 19206820986 783922434819 39.17 0.96
7 tih_rna_sample_00510_23LGNLLT4_1 GTACGCATCG GAGTTGTTCA 1 6682689220 6271260596 258312237308 38.65 0.94
7 tih_rna_sample_00510_23LGNLLT4_1 GTACGCATCG GAGTTGTTCA 2 6682689220 6344897861 260301463679 38.95 0.95
7 tih_rna_sample_00512_23LGNLLT4_1 ACTTCCGTTC CAATTCCGTG 1 17679915030 16911370086 691030446783 39.09 0.96
7 tih_rna_sample_00512_23LGNLLT4_1 ACTTCCGTTC CAATTCCGTG 2 17679915030 16933143106 691869694927 39.13 0.96
7 FFPE_HD789_02_RNA_0011_23LGNLLT4_1 CCACCTGCTT TGTTACCGTC 1 22244079535 21576423263 876258554597 39.39 0.97
7 FFPE_HD789_02_RNA_0011_23LGNLLT4_1 CCACCTGCTT TGTTACCGTC 2 22244079535 21199462667 867595654508 39.00 0.95
7 tih_rna_sample_00528_23LGNLLT4_1 TGGTGGTTGT TACCTGTCAA 1 10901963081 10431214771 426495217990 39.12 0.96
7 tih_rna_sample_00528_23LGNLLT4_1 TGGTGGTTGT TACCTGTCAA 2 10901963081 10351929758 424630997201 38.95 0.95
7 tih_rna_sample_00531_23LGNLLT4_1 ACGCAACACA CATTCAGGAG 1 1147354172 1019612362 43055472229 37.53 0.89
7 tih_rna_sample_00531_23LGNLLT4_1 ACGCAACACA CATTCAGGAG 2 1147354172 1065420277 44215203523 38.54 0.93
7 tih_rna_sample_00535_23LGNLLT4_1 CCAGTGCACT CCTCCGTATC 1 3111594486 2847189369 118699542372 38.15 0.92
7 tih_rna_sample_00535_23LGNLLT4_1 CCAGTGCACT CCTCCGTATC 2 3111594486 2896117717 119944941520 38.55 0.93
7 tih_rna_sample_00317_23LGNLLT4_1 CATCAGGCGT CGTGTTACCG 1 8928593005 8617999443 350879101608 39.30 0.97
7 tih_rna_sample_00317_23LGNLLT4_1 CATCAGGCGT CGTGTTACCG 2 8928593005 8493311598 348005265891 38.98 0.95
7 tih_rna_sample_00536_23LGNLLT4_1 ATCCTAGAAC TGAAGTCTGC 1 960210661 827200320 35559955935 37.03 0.86
7 tih_rna_sample_00536_23LGNLLT4_1 ATCCTAGAAC TGAAGTCTGC 2 960210661 837641741 35799859700 37.28 0.87
7 tih_rna_sample_00319_23LGNLLT4_1 GCCTAGAGTC ATGGTTCTCT 1 18569968222 17754282910 725269071433 39.06 0.96
7 tih_rna_sample_00319_23LGNLLT4_1 GCCTAGAGTC ATGGTTCTCT 2 18569968222 17780215267 726516535561 39.12 0.96
7 tih_rna_sample_00543_23LGNLLT4_1 CTTACTCTCT CTGCTTAAGG 1 5356669583 5014882938 206929948266 38.63 0.94
7 tih_rna_sample_00543_23LGNLLT4_1 CTTACTCTCT CTGCTTAAGG 2 5356669583 5059854484 208094111026 38.85 0.94
7 tih_rna_sample_00321_23LGNLLT4_1 CCGACAACCT TTCTACCTGT 1 18519022785 17541356688 719815584807 38.87 0.95
7 tih_rna_sample_00321_23LGNLLT4_1 CCGACAACCT TTCTACCTGT 2 18519022785 17578107333 721132923849 38.94 0.95
7 FFPE_V4_0001_RNA_0001_23LGNLLT4_1 GATCTGTATG ATCGAAGAGC 1 18136917587 17484012303 711736442880 39.24 0.96
7 FFPE_V4_0001_RNA_0001_23LGNLLT4_1 GATCTGTATG ATCGAAGAGC 2 18136917587 17379258910 709794959629 39.14 0.96
7 tih_rna_sample_00322_23LGNLLT4_1 ATAGGCAGTG CAGAACTTAG 1 13810160114 13025190310 535235314822 38.76 0.94
7 tih_rna_sample_00322_23LGNLLT4_1 ATAGGCAGTG CAGAACTTAG 2 13810160114 13103682167 537661463033 38.93 0.95
7 tih_rna_sample_00323_23LGNLLT4_1 GAATAGAGTG CACAGCGTCT 1 8271914088 7625045010 316444755810 38.26 0.92
7 tih_rna_sample_00323_23LGNLLT4_1 GAATAGAGTG CACAGCGTCT 2 8271914088 7791764440 320866476409 38.79 0.94
7 tih_rna_sample_00331_23LGNLLT4_1 ATGGTTGTTG AGTTATGAGG 1 12821558735 11989060931 494399628860 38.56 0.94
7 tih_rna_sample_00331_23LGNLLT4_1 ATGGTTGTTG AGTTATGAGG 2 12821558735 12127617787 498385448827 38.87 0.95
7 tih_rna_sample_00548_23LGNLLT4_1 ACAATAGCAC GTATGCCTAT 1 7187830879 6773135360 278687265671 38.77 0.94
7 tih_rna_sample_00548_23LGNLLT4_1 ACAATAGCAC GTATGCCTAT 2 7187830879 6798453357 279374112897 38.87 0.95
7 tih_rna_sample_00332_23LGNLLT4_1 CTACAAGTTC GCACCATGAA 1 4116220891 3816757278 158115326415 38.41 0.93
7 tih_rna_sample_00332_23LGNLLT4_1 CTACAAGTTC GCACCATGAA 2 4116220891 3841428863 158864774213 38.59 0.93
7 tih_rna_sample_00549_23LGNLLT4_1 AACCTGATCT ATTCCGTCCG 1 14270992786 13537980107 555345008711 38.91 0.95
7 tih_rna_sample_00549_23LGNLLT4_1 AACCTGATCT ATTCCGTCCG 2 14270992786 13465939210 554079682009 38.83 0.94
7 Undetermined 1 23885229075 19756178030 862148069465 36.10 0.83
7 Undetermined 2 23885229075 19449111451 851385695416 35.64 0.81
97 rows