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Filename
Quality_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Quality_Metrics.csv
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10.4 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:39 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 1 32633237405 31190795540 1275276186776 39.08 0.96
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 2 32633237405 31004128858 1271750483872 38.97 0.95
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 1 25419375334 24485100712 998164322878 39.27 0.96
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 2 25419375334 24073752588 988738018092 38.90 0.95
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 1 19817732562 19048129752 777171509382 39.22 0.96
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 2 19817732562 18829526821 772197841873 38.96 0.95
3 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 1 12988142086 12342742068 505955338422 38.96 0.95
3 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 2 12988142086 12292079283 505091601360 38.89 0.95
3 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 1 7982962602 7532371785 309610707549 38.78 0.94
3 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 2 7982962602 7483578773 308759949248 38.68 0.94
3 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 1 12030097067 11214657342 463155304233 38.50 0.93
3 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 2 12030097067 11255416302 464929066728 38.65 0.94
3 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 1 9615848969 8975843481 370492890429 38.53 0.93
3 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 2 9615848969 9021347442 372118519863 38.70 0.94
3 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 1 9052002285 8458093277 348909922862 38.55 0.93
3 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 2 9052002285 8493953401 350340685441 38.70 0.94
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 1 22940627888 21918889722 895865613612 39.05 0.96
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 2 22940627888 21748789643 892817816906 38.92 0.95
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 1 21177745621 20409981803 831792547922 39.28 0.96
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 2 21177745621 20051994018 823575573807 38.89 0.95
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 1 18252275396 17496040040 714185158421 39.13 0.96
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 2 18252275396 17358718275 711574695159 38.99 0.95
3 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 1 15041213586 14182322279 582850784237 38.75 0.94
3 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 2 15041213586 14148819267 582923671251 38.76 0.94
3 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 1 10583623371 9924783512 408752681918 38.62 0.94
3 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 2 10583623371 9959264166 410222720157 38.76 0.94
3 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 1 9505607795 8916144997 367232378476 38.63 0.94
3 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 2 9505607795 8912991274 367713696796 38.68 0.94
3 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 1 3935977023 3602837492 150067183226 38.13 0.92
3 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 2 3935977023 3637964692 151180039912 38.41 0.92
3 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 1 13539918283 12718536028 523493535322 38.66 0.94
3 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 2 13539918283 12722108541 524411789289 38.73 0.94
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 1 22718519270 21719602076 887926495565 39.08 0.96
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 2 22718519270 21561823296 884579058144 38.94 0.95
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 1 19761021643 18860831758 771561755989 39.04 0.95
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 2 19761021643 18739307526 769090747530 38.92 0.95
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 1 20339199133 19406985145 793710116032 39.02 0.95
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 2 20339199133 19299543026 791873805491 38.93 0.95
3 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 1 7611352055 6570771054 281418175158 36.97 0.86
3 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 2 7611352055 6906130107 289595429688 38.05 0.91
3 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 1 10435600034 9887233449 405996348927 38.90 0.95
3 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 2 10435600034 9810574209 404242483461 38.74 0.94
3 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 1 8669713622 8268958298 338437698080 39.04 0.95
3 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 2 8669713622 8154353175 335807068965 38.73 0.94
3 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 1 7077968111 6756390217 276582383488 39.08 0.95
3 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 2 7077968111 6628898704 273648743647 38.66 0.94
3 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 1 24594578 15668782 787851499 32.03 0.64
3 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 2 24594578 19792773 891940401 36.27 0.80
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 1 14952796140 14284768204 584130703141 39.06 0.96
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 2 14952796140 14147199253 581197260649 38.87 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 1 11371703696 10816115981 443113837196 38.97 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 2 11371703696 10694510172 440553270630 38.74 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 1 10018663364 9459611478 388679571861 38.80 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 2 10018663364 9427520544 388346071746 38.76 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 1 9203830973 8682878239 356764019596 38.76 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 2 9203830973 8658047255 356674659338 38.75 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 1 9056096650 8563823282 351667425632 38.83 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 2 9056096650 8539835786 351382763240 38.80 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 1 9071907709 8595612630 352606297995 38.87 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 2 9071907709 8540893890 351720668679 38.77 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 1 9286539411 8771878121 360396244454 38.81 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 2 9286539411 8720974107 359477304000 38.71 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 1 7336856403 6879593409 283408845759 38.63 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 2 7336856403 6899404606 284279317180 38.75 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 1 16630455366 15841984332 648608902608 39.00 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 2 16630455366 15697094987 645612823823 38.82 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 1 12484236060 11946723870 488382617238 39.12 0.96
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 2 12484236060 11813550335 485273300171 38.87 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 1 10903461303 10348382829 424145385078 38.90 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 2 10903461303 10264576130 422691095633 38.77 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 1 8778189757 8251188484 339762980377 38.71 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 2 8778189757 8237026384 339657965416 38.69 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 1 9210539450 8643725538 356011250364 38.65 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 2 9210539450 8677505454 357171860037 38.78 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 1 9232941810 8827207204 361082235037 39.11 0.96
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 2 9232941810 8643647975 356930418416 38.66 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 1 9364674210 8802592702 362193435601 38.68 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 2 9364674210 8796529739 362559686927 38.72 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 1 7862132553 7373055678 303870123111 38.65 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 2 7862132553 7385563302 304427145807 38.72 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 1 11942102421 11351488482 465366997653 38.97 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 2 11942102421 11212214481 462296942712 38.71 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 1 10221199060 9597074983 395188271359 38.66 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 2 10221199060 9634202359 396502771246 38.79 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 1 10668579444 10085656154 414444079700 38.85 0.95
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 2 10668579444 10036317341 413438520932 38.75 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 1 9349110036 8763626379 361075956978 38.62 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 2 9349110036 8785876932 362086524204 38.73 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 1 6166846795 5806956278 238774917305 38.72 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 2 6166846795 5785040442 238571167140 38.69 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 1 7632437242 7147930622 294552900902 38.59 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 2 7632437242 7155208328 295225311494 38.68 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 1 8726824389 8336913721 341140224460 39.09 0.96
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 2 8726824389 8200468683 337953005727 38.73 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 1 10043541520 9453449758 388735620349 38.71 0.94
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 2 10043541520 9407623011 388212180510 38.65 0.94
3 Undetermined 1 31725916759 26649131521 1155376963948 36.42 0.84
3 Undetermined 2 31725916759 26048501712 1136239723647 35.81 0.82
99 rows