File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Demultiplex_Stats.csv
Size
5.7 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:39 PM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT-TTGCTCACGG 216114155 211857761 4256394 0 0.0533 0.9803 0.0197 0.0000
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT-GCGCTAGAGA 168340234 163691266 4648968 0 0.0415 0.9724 0.0276 0.0000
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC-GCGATGCCAA 131243262 128242133 3001129 0 0.0324 0.9771 0.0229 0.0000
3 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT-ACGAAGCGAT 86014186 84139109 1875077 0 0.0212 0.9782 0.0218 0.0000
3 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC-ATGTCGTACT 52867302 51678046 1189256 0 0.0130 0.9775 0.0225 0.0000
3 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA-TCTGTATGGT 79669517 78092587 1576930 0 0.0196 0.9802 0.0198 0.0000
3 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA-TTGTCTCTAC 63681119 62224837 1456282 0 0.0157 0.9771 0.0229 0.0000
3 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA-TTCCGGCTGT 59947035 58755310 1191725 0 0.0148 0.9801 0.0199 0.0000
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG-TAACCAGATC 151924688 148993609 2931079 0 0.0375 0.9807 0.0193 0.0000
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT-GCAGCGTTAG 140249971 137266632 2983339 0 0.0346 0.9787 0.0213 0.0000
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG-AGAAGGTACT 120875996 117953483 2922513 0 0.0298 0.9758 0.0242 0.0000
3 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG-AGAGCTCTAC 99610686 96899307 2711379 0 0.0246 0.9728 0.0272 0.0000
3 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA-GAACCTCCTA 70090221 68355233 1734988 0 0.0173 0.9752 0.0248 0.0000
3 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA-GAACGCGACA 62951045 61485627 1465418 0 0.0155 0.9767 0.0233 0.0000
3 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG-GCATTATAGG 26066073 25493810 572263 0 0.0064 0.9780 0.0220 0.0000
3 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA-CGTTGTTGCG 89668333 87491873 2176460 0 0.0221 0.9757 0.0243 0.0000
3 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT-GATTCCTTAC 150453770 147385942 3067828 0 0.0371 0.9796 0.0204 0.0000
3 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG-TACAACGTGT 130867693 127713623 3154070 0 0.0323 0.9759 0.0241 0.0000
3 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG-TCTCCTGGTT 134696683 130680769 4015914 0 0.0332 0.9702 0.0298 0.0000
3 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT-AGCATGGCAT 50406305 49063726 1342579 0 0.0124 0.9734 0.0266 0.0000
3 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC-GACGTTACTT 69109934 67565763 1544171 0 0.0170 0.9777 0.0223 0.0000
3 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT-GCCATAGAAT 57415322 56156802 1258520 0 0.0142 0.9781 0.0219 0.0000
3 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC-ACAGATCTCA 46873961 45850385 1023576 0 0.0116 0.9782 0.0218 0.0000
3 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG-GAAGACTTAG 162878 158332 4546 0 0.0000 0.9721 0.0279 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC-GAGAACTGGA 99025140 96335354 2689786 0 0.0244 0.9728 0.0272 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT-AGCGCTACAG 75309296 73473160 1836136 0 0.0186 0.9756 0.0244 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG-TGATCAGTCT 66348764 64919012 1429752 0 0.0164 0.9785 0.0215 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA-GTTCGAACTC 60952523 59603111 1349412 0 0.0150 0.9779 0.0221 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC-CTTACACTGA 59974150 58724248 1249902 0 0.0148 0.9792 0.0208 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG-AAGTGCACCG 60078859 58427017 1651842 0 0.0148 0.9725 0.0275 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT-AGTTGTGATC 61500261 60168206 1332055 0 0.0152 0.9783 0.0217 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA-TCCAACACCG 48588453 47449777 1138676 0 0.0120 0.9766 0.0234 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC-GTGTTCACGT 110135466 107793116 2342350 0 0.0272 0.9787 0.0213 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT-CCTAGGCGAT 82677060 76928280 5748780 0 0.0204 0.9305 0.0695 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG-CGTTCAACCG 72208353 70023882 2184471 0 0.0178 0.9697 0.0303 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT-TCTTATCCGG 58133707 56626781 1506926 0 0.0143 0.9741 0.0259 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA-CCTCCATTCT 60996950 59674889 1322061 0 0.0150 0.9783 0.0217 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT-ATGTTCGCGC 61145310 59637397 1507913 0 0.0151 0.9753 0.0247 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA-ATTCGCCGGT 62017710 60322792 1694918 0 0.0153 0.9727 0.0273 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG-CAGATGTTAC 52067103 50953263 1113840 0 0.0128 0.9786 0.0214 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC-TGCAATTGGC 79086771 77563055 1523716 0 0.0195 0.9807 0.0193 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG-AATGCTCTAG 67690060 65719637 1970423 0 0.0167 0.9709 0.0291 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC-CCATCGCATT 70652844 69101610 1551234 0 0.0174 0.9780 0.0220 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA-ACAGCTCCTG 61914636 60476371 1438265 0 0.0153 0.9768 0.0232 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA-GAGCTGGAAT 40840045 39700499 1139546 0 0.0101 0.9721 0.0279 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA-TGCTCATCCG 50545942 47821927 2724015 0 0.0125 0.9461 0.0539 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC-TCAATTGACG 57793539 56575713 1217826 0 0.0143 0.9789 0.0211 0.0000
3 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA-AGACGCAAGA 66513520 64474666 2038854 0 0.0164 0.9693 0.0307 0.0000
3 Undetermined 210105409 210105409 0 0 0.0518 1.0000 0.0000 0.0000
50 rows