Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
3,FFPE_HD834_01_RNA_0001_23LGNLLT4_1,TAGCGAGGCT-TTGCTCACGG,216114155,211857761,4256394,0,0.0533,0.9803,0.0197,0.0000
3,FFPE_HD835_01_RNA_0001_23LGNLLT4_1,CCAACTGTAT-GCGCTAGAGA,168340234,163691266,4648968,0,0.0415,0.9724,0.0276,0.0000
3,FFPE_HD789_01_RNA_0002_23LGNLLT4_1,GAGTAGTGAC-GCGATGCCAA,131243262,128242133,3001129,0,0.0324,0.9771,0.0229,0.0000
3,tih_rna_sample_00017_23LGNLLT4_1,CCAGTATTCT-ACGAAGCGAT,86014186,84139109,1875077,0,0.0212,0.9782,0.0218,0.0000
3,tih_rna_sample_00038_23LGNLLT4_1,ATCATACCGC-ATGTCGTACT,52867302,51678046,1189256,0,0.0130,0.9775,0.0225,0.0000
3,tih_rna_sample_00067_23LGNLLT4_1,ATTCGCACTA-TCTGTATGGT,79669517,78092587,1576930,0,0.0196,0.9802,0.0198,0.0000
3,tih_rna_sample_00142_23LGNLLT4_1,CTCTTCAGCA-TTGTCTCTAC,63681119,62224837,1456282,0,0.0157,0.9771,0.0229,0.0000
3,tih_rna_sample_00143_23LGNLLT4_1,CTGTATGCCA-TTCCGGCTGT,59947035,58755310,1191725,0,0.0148,0.9801,0.0199,0.0000
3,FFPE_HD834_01_RNA_0001_23LGNLLT4_2,TCTGACTATG-TAACCAGATC,151924688,148993609,2931079,0,0.0375,0.9807,0.0193,0.0000
3,FFPE_HD835_01_RNA_0001_23LGNLLT4_2,TGTGACGTAT-GCAGCGTTAG,140249971,137266632,2983339,0,0.0346,0.9787,0.0213,0.0000
3,FFPE_HD789_01_RNA_0002_23LGNLLT4_2,AGAAGATTGG-AGAAGGTACT,120875996,117953483,2922513,0,0.0298,0.9758,0.0242,0.0000
3,tih_rna_sample_00144_23LGNLLT4_1,ATCCAGCATG-AGAGCTCTAC,99610686,96899307,2711379,0,0.0246,0.9728,0.0272,0.0000
3,tih_rna_sample_00270_23LGNLLT4_1,GCGCCATATA-GAACCTCCTA,70090221,68355233,1734988,0,0.0173,0.9752,0.0248,0.0000
3,tih_rna_sample_00276_23LGNLLT4_1,CACTCGCATA-GAACGCGACA,62951045,61485627,1465418,0,0.0155,0.9767,0.0233,0.0000
3,tih_rna_sample_00346_23LGNLLT4_1,AAGGTCAATG-GCATTATAGG,26066073,25493810,572263,0,0.0064,0.9780,0.0220,0.0000
3,tih_rna_sample_00357_23LGNLLT4_1,GTGACGCACA-CGTTGTTGCG,89668333,87491873,2176460,0,0.0221,0.9757,0.0243,0.0000
3,FFPE_HD834_01_RNA_0001_23LGNLLT4_3,TGTCAGGCTT-GATTCCTTAC,150453770,147385942,3067828,0,0.0371,0.9796,0.0204,0.0000
3,FFPE_HD835_01_RNA_0001_23LGNLLT4_3,CACGTGATGG-TACAACGTGT,130867693,127713623,3154070,0,0.0323,0.9759,0.0241,0.0000
3,FFPE_HD789_01_RNA_0002_23LGNLLT4_3,CCATCACGTG-TCTCCTGGTT,134696683,130680769,4015914,0,0.0332,0.9702,0.0298,0.0000
3,tih_rna_sample_00401_23LGNLLT4_1,ACCAGGAATT-AGCATGGCAT,50406305,49063726,1342579,0,0.0124,0.9734,0.0266,0.0000
3,tih_rna_sample_00375_23LGNLLT4_1,TAAGGCTCAC-GACGTTACTT,69109934,67565763,1544171,0,0.0170,0.9777,0.0223,0.0000
3,tih_rna_sample_00423_23LGNLLT4_1,TGGCACTGAT-GCCATAGAAT,57415322,56156802,1258520,0,0.0142,0.9781,0.0219,0.0000
3,tih_rna_sample_00417_23LGNLLT4_1,CATATGGTGC-ACAGATCTCA,46873961,45850385,1023576,0,0.0116,0.9782,0.0218,0.0000
3,NTC_0001_0001_23LGNLLT4_2,GCACTACCAG-GAAGACTTAG,162878,158332,4546,0,0.0000,0.9721,0.0279,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1,GCATAAGATC-GAGAACTGGA,99025140,96335354,2689786,0,0.0244,0.9728,0.0272,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2,AAGGTGTACT-AGCGCTACAG,75309296,73473160,1836136,0,0.0186,0.9756,0.0244,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3,CTTCTAACCG-TGATCAGTCT,66348764,64919012,1429752,0,0.0164,0.9785,0.0215,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4,TCGACCAGCA-GTTCGAACTC,60952523,59603111,1349412,0,0.0150,0.9779,0.0221,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5,GTGACACGTC-CTTACACTGA,59974150,58724248,1249902,0,0.0148,0.9792,0.0208,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6,AATGGACGCG-AAGTGCACCG,60078859,58427017,1651842,0,0.0148,0.9725,0.0275,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7,TCTCCGTACT-AGTTGTGATC,61500261,60168206,1332055,0,0.0152,0.9783,0.0217,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8,TGGAAGCACA-TCCAACACCG,48588453,47449777,1138676,0,0.0120,0.9766,0.0234,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9,GATAGACAAC-GTGTTCACGT,110135466,107793116,2342350,0,0.0272,0.9787,0.0213,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10,AGCGTCTCAT-CCTAGGCGAT,82677060,76928280,5748780,0,0.0204,0.9305,0.0695,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11,CTCTATACTG-CGTTCAACCG,72208353,70023882,2184471,0,0.0178,0.9697,0.0303,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12,ATAGCCGGTT-TCTTATCCGG,58133707,56626781,1506926,0,0.0143,0.9741,0.0259,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13,GTTCTCATCA-CCTCCATTCT,60996950,59674889,1322061,0,0.0150,0.9783,0.0217,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14,CAATGCGTGT-ATGTTCGCGC,61145310,59637397,1507913,0,0.0151,0.9753,0.0247,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15,TGAGTGTACA-ATTCGCCGGT,62017710,60322792,1694918,0,0.0153,0.9727,0.0273,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16,TGCTTCCAAG-CAGATGTTAC,52067103,50953263,1113840,0,0.0128,0.9786,0.0214,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17,CCTACTCTGC-TGCAATTGGC,79086771,77563055,1523716,0,0.0195,0.9807,0.0193,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18,TCGCTGAGAG-AATGCTCTAG,67690060,65719637,1970423,0,0.0167,0.9709,0.0291,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19,CGCTAATTGC-CCATCGCATT,70652844,69101610,1551234,0,0.0174,0.9780,0.0220,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20,TCAGCTGTCA-ACAGCTCCTG,61914636,60476371,1438265,0,0.0153,0.9768,0.0232,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21,AGACGACAGA-GAGCTGGAAT,40840045,39700499,1139546,0,0.0101,0.9721,0.0279,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22,TAGGTCCAGA-TGCTCATCCG,50545942,47821927,2724015,0,0.0125,0.9461,0.0539,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23,TAACCTGAAC-TCAATTGACG,57793539,56575713,1217826,0,0.0143,0.9789,0.0211,0.0000
3,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24,GATAGGTGAA-AGACGCAAGA,66513520,64474666,2038854,0,0.0164,0.9693,0.0307,0.0000
3,Undetermined,,210105409,210105409,0,0,0.0518,1.0000,0.0000,0.0000