File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L003/Reports/Adapter_Metrics.csv
- Size
- 7.8 KB
- Workflow Run
- dev_rna_exp0002_exp0005_73d51683
- Published
- Jun 07, 2026 11:39 PM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_1 | TAGCGAGGCT | TTGCTCACGG | 1 | 0 | 32633237405 | 0.000 |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_1 | TAGCGAGGCT | TTGCTCACGG | 2 | 0 | 32633237405 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_1 | CCAACTGTAT | GCGCTAGAGA | 1 | 0 | 25419375334 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_1 | CCAACTGTAT | GCGCTAGAGA | 2 | 0 | 25419375334 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_1 | GAGTAGTGAC | GCGATGCCAA | 1 | 0 | 19817732562 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_1 | GAGTAGTGAC | GCGATGCCAA | 2 | 0 | 19817732562 | 0.000 |
| 3 | tih_rna_sample_00017_23LGNLLT4_1 | CCAGTATTCT | ACGAAGCGAT | 1 | 0 | 12988142086 | 0.000 |
| 3 | tih_rna_sample_00017_23LGNLLT4_1 | CCAGTATTCT | ACGAAGCGAT | 2 | 0 | 12988142086 | 0.000 |
| 3 | tih_rna_sample_00038_23LGNLLT4_1 | ATCATACCGC | ATGTCGTACT | 1 | 0 | 7982962602 | 0.000 |
| 3 | tih_rna_sample_00038_23LGNLLT4_1 | ATCATACCGC | ATGTCGTACT | 2 | 0 | 7982962602 | 0.000 |
| 3 | tih_rna_sample_00067_23LGNLLT4_1 | ATTCGCACTA | TCTGTATGGT | 1 | 0 | 12030097067 | 0.000 |
| 3 | tih_rna_sample_00067_23LGNLLT4_1 | ATTCGCACTA | TCTGTATGGT | 2 | 0 | 12030097067 | 0.000 |
| 3 | tih_rna_sample_00142_23LGNLLT4_1 | CTCTTCAGCA | TTGTCTCTAC | 1 | 0 | 9615848969 | 0.000 |
| 3 | tih_rna_sample_00142_23LGNLLT4_1 | CTCTTCAGCA | TTGTCTCTAC | 2 | 0 | 9615848969 | 0.000 |
| 3 | tih_rna_sample_00143_23LGNLLT4_1 | CTGTATGCCA | TTCCGGCTGT | 1 | 0 | 9052002285 | 0.000 |
| 3 | tih_rna_sample_00143_23LGNLLT4_1 | CTGTATGCCA | TTCCGGCTGT | 2 | 0 | 9052002285 | 0.000 |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_2 | TCTGACTATG | TAACCAGATC | 1 | 0 | 22940627888 | 0.000 |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_2 | TCTGACTATG | TAACCAGATC | 2 | 0 | 22940627888 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_2 | TGTGACGTAT | GCAGCGTTAG | 1 | 0 | 21177745621 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_2 | TGTGACGTAT | GCAGCGTTAG | 2 | 0 | 21177745621 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_2 | AGAAGATTGG | AGAAGGTACT | 1 | 0 | 18252275396 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_2 | AGAAGATTGG | AGAAGGTACT | 2 | 0 | 18252275396 | 0.000 |
| 3 | tih_rna_sample_00144_23LGNLLT4_1 | ATCCAGCATG | AGAGCTCTAC | 1 | 0 | 15041213586 | 0.000 |
| 3 | tih_rna_sample_00144_23LGNLLT4_1 | ATCCAGCATG | AGAGCTCTAC | 2 | 0 | 15041213586 | 0.000 |
| 3 | tih_rna_sample_00270_23LGNLLT4_1 | GCGCCATATA | GAACCTCCTA | 1 | 0 | 10583623371 | 0.000 |
| 3 | tih_rna_sample_00270_23LGNLLT4_1 | GCGCCATATA | GAACCTCCTA | 2 | 0 | 10583623371 | 0.000 |
| 3 | tih_rna_sample_00276_23LGNLLT4_1 | CACTCGCATA | GAACGCGACA | 1 | 0 | 9505607795 | 0.000 |
| 3 | tih_rna_sample_00276_23LGNLLT4_1 | CACTCGCATA | GAACGCGACA | 2 | 0 | 9505607795 | 0.000 |
| 3 | tih_rna_sample_00346_23LGNLLT4_1 | AAGGTCAATG | GCATTATAGG | 1 | 0 | 3935977023 | 0.000 |
| 3 | tih_rna_sample_00346_23LGNLLT4_1 | AAGGTCAATG | GCATTATAGG | 2 | 0 | 3935977023 | 0.000 |
| 3 | tih_rna_sample_00357_23LGNLLT4_1 | GTGACGCACA | CGTTGTTGCG | 1 | 0 | 13539918283 | 0.000 |
| 3 | tih_rna_sample_00357_23LGNLLT4_1 | GTGACGCACA | CGTTGTTGCG | 2 | 0 | 13539918283 | 0.000 |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_3 | TGTCAGGCTT | GATTCCTTAC | 1 | 0 | 22718519270 | 0.000 |
| 3 | FFPE_HD834_01_RNA_0001_23LGNLLT4_3 | TGTCAGGCTT | GATTCCTTAC | 2 | 0 | 22718519270 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_3 | CACGTGATGG | TACAACGTGT | 1 | 0 | 19761021643 | 0.000 |
| 3 | FFPE_HD835_01_RNA_0001_23LGNLLT4_3 | CACGTGATGG | TACAACGTGT | 2 | 0 | 19761021643 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_3 | CCATCACGTG | TCTCCTGGTT | 1 | 0 | 20339199133 | 0.000 |
| 3 | FFPE_HD789_01_RNA_0002_23LGNLLT4_3 | CCATCACGTG | TCTCCTGGTT | 2 | 0 | 20339199133 | 0.000 |
| 3 | tih_rna_sample_00401_23LGNLLT4_1 | ACCAGGAATT | AGCATGGCAT | 1 | 0 | 7611352055 | 0.000 |
| 3 | tih_rna_sample_00401_23LGNLLT4_1 | ACCAGGAATT | AGCATGGCAT | 2 | 0 | 7611352055 | 0.000 |
| 3 | tih_rna_sample_00375_23LGNLLT4_1 | TAAGGCTCAC | GACGTTACTT | 1 | 0 | 10435600034 | 0.000 |
| 3 | tih_rna_sample_00375_23LGNLLT4_1 | TAAGGCTCAC | GACGTTACTT | 2 | 0 | 10435600034 | 0.000 |
| 3 | tih_rna_sample_00423_23LGNLLT4_1 | TGGCACTGAT | GCCATAGAAT | 1 | 0 | 8669713622 | 0.000 |
| 3 | tih_rna_sample_00423_23LGNLLT4_1 | TGGCACTGAT | GCCATAGAAT | 2 | 0 | 8669713622 | 0.000 |
| 3 | tih_rna_sample_00417_23LGNLLT4_1 | CATATGGTGC | ACAGATCTCA | 1 | 0 | 7077968111 | 0.000 |
| 3 | tih_rna_sample_00417_23LGNLLT4_1 | CATATGGTGC | ACAGATCTCA | 2 | 0 | 7077968111 | 0.000 |
| 3 | NTC_0001_0001_23LGNLLT4_2 | GCACTACCAG | GAAGACTTAG | 1 | 0 | 24594578 | 0.000 |
| 3 | NTC_0001_0001_23LGNLLT4_2 | GCACTACCAG | GAAGACTTAG | 2 | 0 | 24594578 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 | GCATAAGATC | GAGAACTGGA | 1 | 0 | 14952796140 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 | GCATAAGATC | GAGAACTGGA | 2 | 0 | 14952796140 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 | AAGGTGTACT | AGCGCTACAG | 1 | 0 | 11371703696 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 | AAGGTGTACT | AGCGCTACAG | 2 | 0 | 11371703696 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 | CTTCTAACCG | TGATCAGTCT | 1 | 0 | 10018663364 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 | CTTCTAACCG | TGATCAGTCT | 2 | 0 | 10018663364 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 | TCGACCAGCA | GTTCGAACTC | 1 | 0 | 9203830973 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 | TCGACCAGCA | GTTCGAACTC | 2 | 0 | 9203830973 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 | GTGACACGTC | CTTACACTGA | 1 | 0 | 9056096650 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 | GTGACACGTC | CTTACACTGA | 2 | 0 | 9056096650 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 | AATGGACGCG | AAGTGCACCG | 1 | 0 | 9071907709 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 | AATGGACGCG | AAGTGCACCG | 2 | 0 | 9071907709 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 | TCTCCGTACT | AGTTGTGATC | 1 | 0 | 9286539411 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 | TCTCCGTACT | AGTTGTGATC | 2 | 0 | 9286539411 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 | TGGAAGCACA | TCCAACACCG | 1 | 0 | 7336856403 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 | TGGAAGCACA | TCCAACACCG | 2 | 0 | 7336856403 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 | GATAGACAAC | GTGTTCACGT | 1 | 0 | 16630455366 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 | GATAGACAAC | GTGTTCACGT | 2 | 0 | 16630455366 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 | AGCGTCTCAT | CCTAGGCGAT | 1 | 0 | 12484236060 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 | AGCGTCTCAT | CCTAGGCGAT | 2 | 0 | 12484236060 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 | CTCTATACTG | CGTTCAACCG | 1 | 0 | 10903461303 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 | CTCTATACTG | CGTTCAACCG | 2 | 0 | 10903461303 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 | ATAGCCGGTT | TCTTATCCGG | 1 | 0 | 8778189757 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 | ATAGCCGGTT | TCTTATCCGG | 2 | 0 | 8778189757 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 | GTTCTCATCA | CCTCCATTCT | 1 | 0 | 9210539450 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 | GTTCTCATCA | CCTCCATTCT | 2 | 0 | 9210539450 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 | CAATGCGTGT | ATGTTCGCGC | 1 | 0 | 9232941810 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 | CAATGCGTGT | ATGTTCGCGC | 2 | 0 | 9232941810 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 | TGAGTGTACA | ATTCGCCGGT | 1 | 0 | 9364674210 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 | TGAGTGTACA | ATTCGCCGGT | 2 | 0 | 9364674210 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 | TGCTTCCAAG | CAGATGTTAC | 1 | 0 | 7862132553 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 | TGCTTCCAAG | CAGATGTTAC | 2 | 0 | 7862132553 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 | CCTACTCTGC | TGCAATTGGC | 1 | 0 | 11942102421 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 | CCTACTCTGC | TGCAATTGGC | 2 | 0 | 11942102421 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 | TCGCTGAGAG | AATGCTCTAG | 1 | 0 | 10221199060 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 | TCGCTGAGAG | AATGCTCTAG | 2 | 0 | 10221199060 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 | CGCTAATTGC | CCATCGCATT | 1 | 0 | 10668579444 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 | CGCTAATTGC | CCATCGCATT | 2 | 0 | 10668579444 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 | TCAGCTGTCA | ACAGCTCCTG | 1 | 0 | 9349110036 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 | TCAGCTGTCA | ACAGCTCCTG | 2 | 0 | 9349110036 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 | AGACGACAGA | GAGCTGGAAT | 1 | 0 | 6166846795 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 | AGACGACAGA | GAGCTGGAAT | 2 | 0 | 6166846795 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 | TAGGTCCAGA | TGCTCATCCG | 1 | 0 | 7632437242 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 | TAGGTCCAGA | TGCTCATCCG | 2 | 0 | 7632437242 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 | TAACCTGAAC | TCAATTGACG | 1 | 0 | 8726824389 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 | TAACCTGAAC | TCAATTGACG | 2 | 0 | 8726824389 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 | GATAGGTGAA | AGACGCAAGA | 1 | 0 | 10043541520 | 0.000 |
| 3 | SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 | GATAGGTGAA | AGACGCAAGA | 2 | 0 | 10043541520 | 0.000 |
| 3 | Undetermined | 1 | 0 | 31725916759 | 0.000 | ||
| 3 | Undetermined | 2 | 0 | 31725916759 | 0.000 |
99 rows