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Filename
Quality_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L004/Reports/Quality_Metrics.csv
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10.4 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:42 PM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 1 32449876746 31048768880 1269120624236 39.11 0.96
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT TTGCTCACGG 2 32449876746 30896443900 1266233478724 39.02 0.95
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 1 25166180648 24263813295 988893464217 39.29 0.96
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT GCGCTAGAGA 2 25166180648 23885468031 980160165471 38.95 0.95
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 1 19774347846 19026314941 776061560512 39.25 0.96
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC GCGATGCCAA 2 19774347846 18825424328 771429060110 39.01 0.95
4 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 1 12921896121 12295601264 503846448338 38.99 0.95
4 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT ACGAAGCGAT 2 12921896121 12263137295 503333928197 38.95 0.95
4 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 1 7904538638 7465837537 306813042223 38.81 0.94
4 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC ATGTCGTACT 2 7904538638 7430297339 306219421220 38.74 0.94
4 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 1 11922169666 11123207409 459276622971 38.52 0.93
4 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA TCTGTATGGT 2 11922169666 11191544113 461647038664 38.72 0.94
4 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 1 9550428219 8921398141 368162147800 38.55 0.93
4 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA TTGTCTCTAC 2 9550428219 8986283996 370222642337 38.77 0.94
4 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 1 8960358422 8377363377 345517601670 38.56 0.93
4 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA TTCCGGCTGT 2 8960358422 8431496936 347362931294 38.77 0.94
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 1 22911694627 21903692883 895132858611 39.07 0.96
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG TAACCAGATC 2 22911694627 21767533381 892842911599 38.97 0.95
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 1 20999832589 20258924988 825399537462 39.31 0.96
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT GCAGCGTTAG 2 20999832589 19928090279 817746064136 38.94 0.95
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 1 18064288248 17328282666 707209932942 39.15 0.96
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG AGAAGGTACT 2 18064288248 17214370765 705096903292 39.03 0.95
4 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 1 15139992803 14284394943 586949230278 38.77 0.94
4 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG AGAGCTCTAC 2 15139992803 14285931803 587836119035 38.83 0.94
4 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 1 10486779068 9841533483 405240979458 38.64 0.94
4 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA GAACCTCCTA 2 10486779068 9897136671 407173637355 38.83 0.94
4 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 1 9509424320 8926676598 367590888327 38.66 0.94
4 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA GAACGCGACA 2 9509424320 8943559063 368513737912 38.75 0.94
4 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 1 3877520091 3553320859 147954761647 38.16 0.92
4 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG GCATTATAGG 2 3877520091 3597480802 149255474974 38.49 0.93
4 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 1 13327795748 12527685904 515527042489 38.68 0.94
4 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA CGTTGTTGCG 2 13327795748 12559873174 517083069802 38.80 0.94
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 1 22638008637 21664083791 885446187995 39.11 0.96
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT GATTCCTTAC 2 22638008637 21532466180 882608282882 38.99 0.95
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 1 19587634685 18709848825 765265151082 39.07 0.96
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG TACAACGTGT 2 19587634685 18615513551 763348843511 38.97 0.95
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 1 20164691302 19255952504 787376483837 39.05 0.95
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG TCTCCTGGTT 2 20164691302 19174277250 786075091899 38.98 0.95
4 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 1 7544692350 6531124748 279454666670 37.04 0.87
4 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT AGCATGGCAT 2 7544692350 6893319836 288168974249 38.19 0.91
4 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 1 10360483574 9831007300 403510575643 38.95 0.95
4 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC GACGTTACTT 2 10360483574 9768229860 402016009368 38.80 0.94
4 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 1 8601147240 8211973812 336019433763 39.07 0.95
4 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT GCCATAGAAT 2 8601147240 8109153709 333625140268 38.79 0.94
4 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 1 7010619695 6701456538 274213708800 39.11 0.96
4 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC ACAGATCTCA 2 7010619695 6583715122 271481618035 38.72 0.94
4 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 1 24044787 15386147 771777173 32.10 0.64
4 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG GAAGACTTAG 2 24044787 19435140 873902328 36.34 0.81
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 1 14880507608 14231357060 581779876583 39.10 0.96
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC GAGAACTGGA 2 14880507608 14113295478 579230211753 38.93 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 1 11302007985 10759047420 440705044257 38.99 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT AGCGCTACAG 2 11302007985 10654723389 438492005262 38.80 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 1 9919617481 9372258769 385012311673 38.81 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG TGATCAGTCT 2 9919617481 9358883126 385104401672 38.82 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 1 9134358591 8623562110 354246141013 38.78 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA GTTCGAACTC 2 9134358591 8615728357 354539575849 38.81 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 1 9020941434 8539018630 350562096505 38.86 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC CTTACACTGA 2 9020941434 8528857495 350560517272 38.86 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 1 8988097877 8520866785 349484688838 38.88 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG AAGTGCACCG 2 8988097877 8483673596 349001489291 38.83 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 1 9253341457 8749834115 359406710114 38.84 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT AGTTGTGATC 2 9253341457 8715638365 358819441411 38.78 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 1 7274321565 6825054028 281102787622 38.64 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA TCCAACACCG 2 7274321565 6859728763 282319517341 38.81 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 1 16588509680 15819167767 647510899996 39.03 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC GTGTTCACGT 2 16588509680 15696665713 644938732024 38.88 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 1 12393078266 11875313317 485268013840 39.16 0.96
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT CCTAGGCGAT 2 12393078266 11755377494 482416188614 38.93 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 1 10873455338 10326221590 423167970076 38.92 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG CGTTCAACCG 2 10873455338 10262683855 422174873686 38.83 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 1 8720612702 8206200485 337820277650 38.74 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT TCTTATCCGG 2 8720612702 8206731392 338006511035 38.76 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 1 9129347958 8574910925 353094652685 38.68 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA CCTCCATTCT 2 9129347958 8623649182 354573309898 38.84 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 1 9157338375 8766720310 358456558921 39.14 0.96
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT ATGTTCGCGC 2 9157338375 8600576801 354675204335 38.73 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 1 9259048804 8708758354 358264701589 38.69 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA ATTCGCCGGT 2 9259048804 8719974960 359021363946 38.78 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 1 7780187873 7302306007 300897664735 38.67 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG CAGATGTTAC 2 7780187873 7330370413 301781641612 38.79 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 1 11893040407 11321130430 463932434455 39.01 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC TGCAATTGGC 2 11893040407 11199663494 461212007090 38.78 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 1 10099278489 9490641733 390724885747 38.69 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG AATGCTCTAG 2 10099278489 9547009379 392443311851 38.86 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 1 10526885574 9966154533 409373399205 38.89 0.95
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC CCATCGCATT 2 10526885574 9930546026 408614583170 38.82 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 1 9287242769 8713848701 358936501916 38.65 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA ACAGCTCCTG 2 9287242769 8754489256 360335264725 38.80 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 1 6063176990 5712638135 234855555074 38.73 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA GAGCTGGAAT 2 6063176990 5702285956 234911633449 38.74 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 1 7560229193 7085491088 291918671711 38.61 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA TGCTCATCCG 2 7560229193 7108340969 292935603431 38.75 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 1 8695770182 8318176716 340236514893 39.13 0.96
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC TCAATTGACG 2 8695770182 8195609727 337341092505 38.79 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 1 9939416903 9362386989 384926565084 38.73 0.94
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA AGACGCAAGA 2 9939416903 9336083713 384824797150 38.72 0.94
4 Undetermined 1 29740619042 24808410614 1079403039674 36.29 0.83
4 Undetermined 2 29740619042 24233629894 1060769687347 35.67 0.81
99 rows