Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
5,tih_rna_sample_00341_23LGNLLT4_1,TTGGATTGTC-CGGCTGTTAG,72114341,70948941,1165400,0,0.0178,0.9838,0.0162,0.0000
5,NTC_0001_0001_23LGNLLT4_1,AATTGGCACA-CAGTCGGAGT,812912,798395,14517,0,0.0002,0.9821,0.0179,0.0000
5,tih_rna_sample_00344_23LGNLLT4_1,AGGCAATCGC-ATGAGTCTGT,53192363,52520682,671681,0,0.0131,0.9874,0.0126,0.0000
5,tih_rna_sample_00345_23LGNLLT4_1,TGCAACACTA-CGTTCTGGTA,95114284,93677289,1436995,0,0.0234,0.9849,0.0151,0.0000
5,tih_rna_sample_00347_23LGNLLT4_1,GAATCGCCTG-CATTGACGGC,109185669,107350588,1835081,0,0.0269,0.9832,0.0168,0.0000
5,tih_rna_sample_00298_23LGNLLT4_1,TCGCATGACA-TTGGCCAATG,104289637,102733112,1556525,0,0.0257,0.9851,0.0149,0.0000
5,tih_rna_sample_00348_23LGNLLT4_1,TCAATACGTG-GCTGCTAATA,108895198,107209327,1685871,0,0.0268,0.9845,0.0155,0.0000
5,tih_rna_sample_00354_23LGNLLT4_1,ATTCTCCACG-TCGATGATCG,47746130,46971373,774757,0,0.0118,0.9838,0.0162,0.0000
5,tih_rna_sample_00477_23LGNLLT4_1,TGTTACAGAG-TGTGTACCAG,127306659,124045348,3261311,0,0.0314,0.9744,0.0256,0.0000
5,tih_rna_sample_00355_23LGNLLT4_1,TTACGGACGC-ATTGGCCAGC,106776507,105126014,1650493,0,0.0263,0.9845,0.0155,0.0000
5,tih_rna_sample_00358_23LGNLLT4_1,CCAATGTTGA-CTTGAATGTC,70724570,69854191,870379,0,0.0174,0.9877,0.0123,0.0000
5,tih_rna_sample_00303_23LGNLLT4_1,CGTACTTAGA-CCGATGTTCA,82375922,81184687,1191235,0,0.0203,0.9855,0.0145,0.0000
5,tih_rna_sample_00360_23LGNLLT4_1,GCCGTGAACA-GCACCACCAT,54854679,53915330,939349,0,0.0135,0.9829,0.0171,0.0000
5,tih_rna_sample_00566_23LGNLLT4_1,AGGAGACCAC-TACCACGTAG,122295239,120527209,1768030,0,0.0301,0.9855,0.0145,0.0000
5,tih_rna_sample_00483_23LGNLLT4_1,GAAGCAAGCG-TCACCGACTA,75375839,74059772,1316067,0,0.0186,0.9825,0.0175,0.0000
5,tih_rna_sample_00307_23LGNLLT4_1,AACGCGACTG-GACCTACGAG,75288900,74163535,1125365,0,0.0185,0.9851,0.0149,0.0000
5,tih_rna_sample_00485_23LGNLLT4_1,TTCGCGGACT-AGAGAGTGGT,119254939,117508412,1746527,0,0.0294,0.9854,0.0146,0.0000
5,tih_rna_sample_00308_23LGNLLT4_1,TCGTGACGAC-GTGACTAACT,67471571,66554662,916909,0,0.0166,0.9864,0.0136,0.0000
5,tih_rna_sample_00309_23LGNLLT4_1,TCAATCTAGC-TCCGAATAAG,107212477,105772219,1440258,0,0.0264,0.9866,0.0134,0.0000
5,tih_rna_sample_00487_23LGNLLT4_1,GCGGAGTCAA-CTCTATAGCT,38068332,37454920,613412,0,0.0094,0.9839,0.0161,0.0000
5,tih_rna_sample_00494_23LGNLLT4_1,GATGCTAGAA-TGGATGCCAG,56494391,55712583,781808,0,0.0139,0.9862,0.0138,0.0000
5,tih_rna_sample_00499_23LGNLLT4_1,ACGATGGTTA-AATTGCTAGG,166849159,164263877,2585282,0,0.0411,0.9845,0.0155,0.0000
5,tih_rna_sample_00500_23LGNLLT4_1,AGAGCAGTAT-CAAGAGGAGG,148369402,146185042,2184360,0,0.0366,0.9853,0.0147,0.0000
5,tih_rna_sample_00501_23LGNLLT4_1,TTGTGATCCT-ATGAAGGCAT,136935572,135174346,1761226,0,0.0337,0.9871,0.0129,0.0000
5,tih_rna_sample_00452_23LGNLLT4_1,TAAGATCGGA-TTCATCCGTG,134583303,132911933,1671370,0,0.0332,0.9876,0.0124,0.0000
5,tih_rna_sample_00505_23LGNLLT4_1,TTAGTTGCTG-ATGGCGGATT,46849102,46223111,625991,0,0.0115,0.9866,0.0134,0.0000
5,tih_rna_sample_00508_23LGNLLT4_1,AGTCAGATGC-CTCACACACT,90715042,89241170,1473872,0,0.0223,0.9838,0.0162,0.0000
5,tih_rna_sample_00312_23LGNLLT4_1,AGTACAACTG-CATTGAGTTC,101428301,100010001,1418300,0,0.0250,0.9860,0.0140,0.0000
5,tih_rna_sample_00509_23LGNLLT4_1,CTTAGTACGC-GCTACAACGA,132413725,130317646,2096079,0,0.0326,0.9842,0.0158,0.0000
5,tih_rna_sample_00510_23LGNLLT4_1,GTACGCATCG-GAGTTGTTCA,43785571,43017267,768304,0,0.0108,0.9825,0.0175,0.0000
5,tih_rna_sample_00512_23LGNLLT4_1,ACTTCCGTTC-CAATTCCGTG,116204820,114620686,1584134,0,0.0286,0.9864,0.0136,0.0000
5,FFPE_HD789_02_RNA_0011_23LGNLLT4_1,CCACCTGCTT-TGTTACCGTC,147600729,144953504,2647225,0,0.0364,0.9821,0.0179,0.0000
5,tih_rna_sample_00528_23LGNLLT4_1,TGGTGGTTGT-TACCTGTCAA,70268667,69340385,928282,0,0.0173,0.9868,0.0132,0.0000
5,tih_rna_sample_00531_23LGNLLT4_1,ACGCAACACA-CATTCAGGAG,7526460,7394706,131754,0,0.0019,0.9825,0.0175,0.0000
5,tih_rna_sample_00535_23LGNLLT4_1,CCAGTGCACT-CCTCCGTATC,20146327,19680430,465897,0,0.0050,0.9769,0.0231,0.0000
5,tih_rna_sample_00317_23LGNLLT4_1,CATCAGGCGT-CGTGTTACCG,58111105,57088080,1023025,0,0.0143,0.9824,0.0176,0.0000
5,tih_rna_sample_00536_23LGNLLT4_1,ATCCTAGAAC-TGAAGTCTGC,6218673,6124375,94298,0,0.0015,0.9848,0.0152,0.0000
5,tih_rna_sample_00319_23LGNLLT4_1,GCCTAGAGTC-ATGGTTCTCT,121904791,120294952,1609839,0,0.0300,0.9868,0.0132,0.0000
5,tih_rna_sample_00543_23LGNLLT4_1,CTTACTCTCT-CTGCTTAAGG,34945132,34315762,629370,0,0.0086,0.9820,0.0180,0.0000
5,tih_rna_sample_00321_23LGNLLT4_1,CCGACAACCT-TTCTACCTGT,120786468,118846724,1939744,0,0.0298,0.9839,0.0161,0.0000
5,FFPE_V4_0001_RNA_0001_23LGNLLT4_1,GATCTGTATG-ATCGAAGAGC,119937054,118209576,1727478,0,0.0295,0.9856,0.0144,0.0000
5,tih_rna_sample_00322_23LGNLLT4_1,ATAGGCAGTG-CAGAACTTAG,90206378,89023122,1183256,0,0.0222,0.9869,0.0131,0.0000
5,tih_rna_sample_00323_23LGNLLT4_1,GAATAGAGTG-CACAGCGTCT,53455312,52664946,790366,0,0.0132,0.9852,0.0148,0.0000
5,tih_rna_sample_00331_23LGNLLT4_1,ATGGTTGTTG-AGTTATGAGG,83814396,82666943,1147453,0,0.0206,0.9863,0.0137,0.0000
5,tih_rna_sample_00548_23LGNLLT4_1,ACAATAGCAC-GTATGCCTAT,47202427,46515133,687294,0,0.0116,0.9854,0.0146,0.0000
5,tih_rna_sample_00332_23LGNLLT4_1,CTACAAGTTC-GCACCATGAA,26670951,26260417,410534,0,0.0066,0.9846,0.0154,0.0000
5,tih_rna_sample_00549_23LGNLLT4_1,AACCTGATCT-ATTCCGTCCG,93010623,91430475,1580148,0,0.0229,0.9830,0.0170,0.0000
5,Undetermined,,144447804,144447804,0,0,0.0356,1.0000,0.0000,0.0000