File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/L004/Reports/Demultiplex_Stats.csv
Size
5.7 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:42 PM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_1 TAGCGAGGCT-TTGCTCACGG 214899846 211390395 3509451 0 0.0535 0.9837 0.0163 0.0000
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_1 CCAACTGTAT-GCGCTAGAGA 166663448 162633589 4029859 0 0.0415 0.9758 0.0242 0.0000
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_1 GAGTAGTGAC-GCGATGCCAA 130955946 128392902 2563044 0 0.0326 0.9804 0.0196 0.0000
4 tih_rna_sample_00017_23LGNLLT4_1 CCAGTATTCT-ACGAAGCGAT 85575471 84028813 1546658 0 0.0213 0.9819 0.0181 0.0000
4 tih_rna_sample_00038_23LGNLLT4_1 ATCATACCGC-ATGTCGTACT 52347938 51362384 985554 0 0.0130 0.9812 0.0188 0.0000
4 tih_rna_sample_00067_23LGNLLT4_1 ATTCGCACTA-TCTGTATGGT 78954766 77663400 1291366 0 0.0197 0.9836 0.0164 0.0000
4 tih_rna_sample_00142_23LGNLLT4_1 CTCTTCAGCA-TTGTCTCTAC 63247869 61944101 1303768 0 0.0157 0.9794 0.0206 0.0000
4 tih_rna_sample_00143_23LGNLLT4_1 CTGTATGCCA-TTCCGGCTGT 59340122 58376064 964058 0 0.0148 0.9838 0.0162 0.0000
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_2 TCTGACTATG-TAACCAGATC 151733077 149363126 2369951 0 0.0378 0.9844 0.0156 0.0000
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_2 TGTGACGTAT-GCAGCGTTAG 139071739 136610733 2461006 0 0.0346 0.9823 0.0177 0.0000
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_2 AGAAGATTGG-AGAAGGTACT 119631048 117129424 2501624 0 0.0298 0.9791 0.0209 0.0000
4 tih_rna_sample_00144_23LGNLLT4_1 ATCCAGCATG-AGAGCTCTAC 100264853 98099102 2165751 0 0.0250 0.9784 0.0216 0.0000
4 tih_rna_sample_00270_23LGNLLT4_1 GCGCCATATA-GAACCTCCTA 69448868 67970091 1478777 0 0.0173 0.9787 0.0213 0.0000
4 tih_rna_sample_00276_23LGNLLT4_1 CACTCGCATA-GAACGCGACA 62976320 61724909 1251411 0 0.0157 0.9801 0.0199 0.0000
4 tih_rna_sample_00346_23LGNLLT4_1 AAGGTCAATG-GCATTATAGG 25678941 25202121 476820 0 0.0064 0.9814 0.0186 0.0000
4 tih_rna_sample_00357_23LGNLLT4_1 GTGACGCACA-CGTTGTTGCG 88263548 86417392 1846156 0 0.0220 0.9791 0.0209 0.0000
4 FFPE_HD834_01_RNA_0001_23LGNLLT4_3 TGTCAGGCTT-GATTCCTTAC 149920587 147395818 2524769 0 0.0373 0.9832 0.0168 0.0000
4 FFPE_HD835_01_RNA_0001_23LGNLLT4_3 CACGTGATGG-TACAACGTGT 129719435 127033956 2685479 0 0.0323 0.9793 0.0207 0.0000
4 FFPE_HD789_01_RNA_0002_23LGNLLT4_3 CCATCACGTG-TCTCCTGGTT 133541002 129866702 3674300 0 0.0333 0.9725 0.0275 0.0000
4 tih_rna_sample_00401_23LGNLLT4_1 ACCAGGAATT-AGCATGGCAT 49964850 48791223 1173627 0 0.0124 0.9765 0.0235 0.0000
4 tih_rna_sample_00375_23LGNLLT4_1 TAAGGCTCAC-GACGTTACTT 68612474 67308672 1303802 0 0.0171 0.9810 0.0190 0.0000
4 tih_rna_sample_00423_23LGNLLT4_1 TGGCACTGAT-GCCATAGAAT 56961240 55900660 1060580 0 0.0142 0.9814 0.0186 0.0000
4 tih_rna_sample_00417_23LGNLLT4_1 CATATGGTGC-ACAGATCTCA 46427945 45577347 850598 0 0.0116 0.9817 0.0183 0.0000
4 NTC_0001_0001_23LGNLLT4_2 GCACTACCAG-GAAGACTTAG 159237 155344 3893 0 0.0000 0.9756 0.0244 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 GCATAAGATC-GAGAACTGGA 98546408 96249441 2296967 0 0.0245 0.9767 0.0233 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 AAGGTGTACT-AGCGCTACAG 74847735 73266711 1581024 0 0.0186 0.9789 0.0211 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 CTTCTAACCG-TGATCAGTCT 65692831 64504149 1188682 0 0.0164 0.9819 0.0181 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 TCGACCAGCA-GTTCGAACTC 60492441 59345566 1146875 0 0.0151 0.9810 0.0190 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 GTGACACGTC-CTTACACTGA 59741334 58693229 1048105 0 0.0149 0.9825 0.0175 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 AATGGACGCG-AAGTGCACCG 59523827 58076500 1447327 0 0.0148 0.9757 0.0243 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 TCTCCGTACT-AGTTGTGATC 61280407 60140775 1139632 0 0.0153 0.9814 0.0186 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 TGGAAGCACA-TCCAACACCG 48174315 47209469 964846 0 0.0120 0.9800 0.0200 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 GATAGACAAC-GTGTTCACGT 109857680 107917673 1940007 0 0.0274 0.9823 0.0177 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 AGCGTCTCAT-CCTAGGCGAT 82073366 76244601 5828765 0 0.0204 0.9290 0.0710 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 CTCTATACTG-CGTTCAACCG 72009638 70095337 1914301 0 0.0179 0.9734 0.0266 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 ATAGCCGGTT-TCTTATCCGG 57752402 56420476 1331926 0 0.0144 0.9769 0.0231 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 GTTCTCATCA-CCTCCATTCT 60459258 59363482 1095776 0 0.0151 0.9819 0.0181 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 CAATGCGTGT-ATGTTCGCGC 60644625 59372066 1272559 0 0.0151 0.9790 0.0210 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 TGAGTGTACA-ATTCGCCGGT 61318204 59855306 1462898 0 0.0153 0.9761 0.0239 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 TGCTTCCAAG-CAGATGTTAC 51524423 50588779 935644 0 0.0128 0.9818 0.0182 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 CCTACTCTGC-TGCAATTGGC 78761857 77526758 1235099 0 0.0196 0.9843 0.0157 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 TCGCTGAGAG-AATGCTCTAG 66882639 65136460 1746179 0 0.0167 0.9739 0.0261 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 CGCTAATTGC-CCATCGCATT 69714474 68419728 1294746 0 0.0174 0.9814 0.0186 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 TCAGCTGTCA-ACAGCTCCTG 61504919 60300877 1204042 0 0.0153 0.9804 0.0196 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 AGACGACAGA-GAGCTGGAAT 40153490 39157835 995655 0 0.0100 0.9752 0.0248 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 TAGGTCCAGA-TGCTCATCCG 50067743 47669214 2398529 0 0.0125 0.9521 0.0479 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 TAACCTGAAC-TCAATTGACG 57587882 56583258 1004624 0 0.0143 0.9826 0.0174 0.0000
4 SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 GATAGGTGAA-AGACGCAAGA 65823953 63977069 1846884 0 0.0164 0.9719 0.0281 0.0000
4 Undetermined 196957742 196957742 0 0 0.0490 1.0000 0.0000 0.0000
50 rows