Lane,SampleID,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
4,FFPE_HD834_01_RNA_0001_23LGNLLT4_1,TAGCGAGGCT-TTGCTCACGG,214899846,211390395,3509451,0,0.0535,0.9837,0.0163,0.0000
4,FFPE_HD835_01_RNA_0001_23LGNLLT4_1,CCAACTGTAT-GCGCTAGAGA,166663448,162633589,4029859,0,0.0415,0.9758,0.0242,0.0000
4,FFPE_HD789_01_RNA_0002_23LGNLLT4_1,GAGTAGTGAC-GCGATGCCAA,130955946,128392902,2563044,0,0.0326,0.9804,0.0196,0.0000
4,tih_rna_sample_00017_23LGNLLT4_1,CCAGTATTCT-ACGAAGCGAT,85575471,84028813,1546658,0,0.0213,0.9819,0.0181,0.0000
4,tih_rna_sample_00038_23LGNLLT4_1,ATCATACCGC-ATGTCGTACT,52347938,51362384,985554,0,0.0130,0.9812,0.0188,0.0000
4,tih_rna_sample_00067_23LGNLLT4_1,ATTCGCACTA-TCTGTATGGT,78954766,77663400,1291366,0,0.0197,0.9836,0.0164,0.0000
4,tih_rna_sample_00142_23LGNLLT4_1,CTCTTCAGCA-TTGTCTCTAC,63247869,61944101,1303768,0,0.0157,0.9794,0.0206,0.0000
4,tih_rna_sample_00143_23LGNLLT4_1,CTGTATGCCA-TTCCGGCTGT,59340122,58376064,964058,0,0.0148,0.9838,0.0162,0.0000
4,FFPE_HD834_01_RNA_0001_23LGNLLT4_2,TCTGACTATG-TAACCAGATC,151733077,149363126,2369951,0,0.0378,0.9844,0.0156,0.0000
4,FFPE_HD835_01_RNA_0001_23LGNLLT4_2,TGTGACGTAT-GCAGCGTTAG,139071739,136610733,2461006,0,0.0346,0.9823,0.0177,0.0000
4,FFPE_HD789_01_RNA_0002_23LGNLLT4_2,AGAAGATTGG-AGAAGGTACT,119631048,117129424,2501624,0,0.0298,0.9791,0.0209,0.0000
4,tih_rna_sample_00144_23LGNLLT4_1,ATCCAGCATG-AGAGCTCTAC,100264853,98099102,2165751,0,0.0250,0.9784,0.0216,0.0000
4,tih_rna_sample_00270_23LGNLLT4_1,GCGCCATATA-GAACCTCCTA,69448868,67970091,1478777,0,0.0173,0.9787,0.0213,0.0000
4,tih_rna_sample_00276_23LGNLLT4_1,CACTCGCATA-GAACGCGACA,62976320,61724909,1251411,0,0.0157,0.9801,0.0199,0.0000
4,tih_rna_sample_00346_23LGNLLT4_1,AAGGTCAATG-GCATTATAGG,25678941,25202121,476820,0,0.0064,0.9814,0.0186,0.0000
4,tih_rna_sample_00357_23LGNLLT4_1,GTGACGCACA-CGTTGTTGCG,88263548,86417392,1846156,0,0.0220,0.9791,0.0209,0.0000
4,FFPE_HD834_01_RNA_0001_23LGNLLT4_3,TGTCAGGCTT-GATTCCTTAC,149920587,147395818,2524769,0,0.0373,0.9832,0.0168,0.0000
4,FFPE_HD835_01_RNA_0001_23LGNLLT4_3,CACGTGATGG-TACAACGTGT,129719435,127033956,2685479,0,0.0323,0.9793,0.0207,0.0000
4,FFPE_HD789_01_RNA_0002_23LGNLLT4_3,CCATCACGTG-TCTCCTGGTT,133541002,129866702,3674300,0,0.0333,0.9725,0.0275,0.0000
4,tih_rna_sample_00401_23LGNLLT4_1,ACCAGGAATT-AGCATGGCAT,49964850,48791223,1173627,0,0.0124,0.9765,0.0235,0.0000
4,tih_rna_sample_00375_23LGNLLT4_1,TAAGGCTCAC-GACGTTACTT,68612474,67308672,1303802,0,0.0171,0.9810,0.0190,0.0000
4,tih_rna_sample_00423_23LGNLLT4_1,TGGCACTGAT-GCCATAGAAT,56961240,55900660,1060580,0,0.0142,0.9814,0.0186,0.0000
4,tih_rna_sample_00417_23LGNLLT4_1,CATATGGTGC-ACAGATCTCA,46427945,45577347,850598,0,0.0116,0.9817,0.0183,0.0000
4,NTC_0001_0001_23LGNLLT4_2,GCACTACCAG-GAAGACTTAG,159237,155344,3893,0,0.0000,0.9756,0.0244,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1,GCATAAGATC-GAGAACTGGA,98546408,96249441,2296967,0,0.0245,0.9767,0.0233,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2,AAGGTGTACT-AGCGCTACAG,74847735,73266711,1581024,0,0.0186,0.9789,0.0211,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3,CTTCTAACCG-TGATCAGTCT,65692831,64504149,1188682,0,0.0164,0.9819,0.0181,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4,TCGACCAGCA-GTTCGAACTC,60492441,59345566,1146875,0,0.0151,0.9810,0.0190,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5,GTGACACGTC-CTTACACTGA,59741334,58693229,1048105,0,0.0149,0.9825,0.0175,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6,AATGGACGCG-AAGTGCACCG,59523827,58076500,1447327,0,0.0148,0.9757,0.0243,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7,TCTCCGTACT-AGTTGTGATC,61280407,60140775,1139632,0,0.0153,0.9814,0.0186,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8,TGGAAGCACA-TCCAACACCG,48174315,47209469,964846,0,0.0120,0.9800,0.0200,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9,GATAGACAAC-GTGTTCACGT,109857680,107917673,1940007,0,0.0274,0.9823,0.0177,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10,AGCGTCTCAT-CCTAGGCGAT,82073366,76244601,5828765,0,0.0204,0.9290,0.0710,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11,CTCTATACTG-CGTTCAACCG,72009638,70095337,1914301,0,0.0179,0.9734,0.0266,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12,ATAGCCGGTT-TCTTATCCGG,57752402,56420476,1331926,0,0.0144,0.9769,0.0231,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13,GTTCTCATCA-CCTCCATTCT,60459258,59363482,1095776,0,0.0151,0.9819,0.0181,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14,CAATGCGTGT-ATGTTCGCGC,60644625,59372066,1272559,0,0.0151,0.9790,0.0210,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15,TGAGTGTACA-ATTCGCCGGT,61318204,59855306,1462898,0,0.0153,0.9761,0.0239,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16,TGCTTCCAAG-CAGATGTTAC,51524423,50588779,935644,0,0.0128,0.9818,0.0182,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17,CCTACTCTGC-TGCAATTGGC,78761857,77526758,1235099,0,0.0196,0.9843,0.0157,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18,TCGCTGAGAG-AATGCTCTAG,66882639,65136460,1746179,0,0.0167,0.9739,0.0261,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19,CGCTAATTGC-CCATCGCATT,69714474,68419728,1294746,0,0.0174,0.9814,0.0186,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20,TCAGCTGTCA-ACAGCTCCTG,61504919,60300877,1204042,0,0.0153,0.9804,0.0196,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21,AGACGACAGA-GAGCTGGAAT,40153490,39157835,995655,0,0.0100,0.9752,0.0248,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22,TAGGTCCAGA-TGCTCATCCG,50067743,47669214,2398529,0,0.0125,0.9521,0.0479,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23,TAACCTGAAC-TCAATTGACG,57587882,56583258,1004624,0,0.0143,0.9826,0.0174,0.0000
4,SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24,GATAGGTGAA-AGACGCAAGA,65823953,63977069,1846884,0,0.0164,0.9719,0.0281,0.0000
4,Undetermined,,196957742,196957742,0,0,0.0490,1.0000,0.0000,0.0000