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Filename
Demultiplex_Stats_aggregate.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0002_exp0005/A23LGNLLT4/nfcore_rnafusion__73d51683--20260607-225254/bclconvert/reports/Demultiplex_Stats_aggregate.csv
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11.6 KB
Workflow Run
dev_rna_exp0002_exp0005_73d51683
Published
Jun 07, 2026 11:50 PM

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SampleID Lanes Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 1,2,3,4 GAGTAGTGAC-GCGATGCCAA 522934407 509602070 13332337 0 0.0161 0.9745 0.0255 0.0
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 1,2,3,4 AGAAGATTGG-AGAAGGTACT 480325155 467488053 12837102 0 0.0148 0.9733 0.0267 0.0
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 1,2,3,4 CCATCACGTG-TCTCCTGGTT 535136407 517726078 17410329 0 0.0165 0.9675 0.0325 0.0
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 5,6,7,8 CCACCTGCTT-TGTTACCGTC 586052933 574524783 11528150 0 0.0181 0.9803 0.0197 0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_1 1,2,3,4 TAGCGAGGCT-TTGCTCACGG 857738448 838452497 19285951 0 0.0264 0.9775 0.0225 0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_2 1,2,3,4 TCTGACTATG-TAACCAGATC 607531705 594292752 13238953 0 0.0187 0.9782 0.0218 0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_3 1,2,3,4 TGTCAGGCTT-GATTCCTTAC 598802268 584998646 13803622 0 0.0185 0.9769 0.0231 0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_1 1,2,3,4 CCAACTGTAT-GCGCTAGAGA 671120297 651016307 20103990 0 0.0207 0.97 0.03 0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_2 1,2,3,4 TGTGACGTAT-GCAGCGTTAG 557991895 544790311 13201584 0 0.0172 0.9763 0.0237 0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_3 1,2,3,4 CACGTGATGG-TACAACGTGT 521948983 508094067 13854916 0 0.0161 0.9735 0.0265 0.0
FFPE_V4_0001_RNA_0001_23LGNLLT4_1 5,6,7,8 GATCTGTATG-ATCGAAGAGC 477896367 470082524 7813843 0 0.0147 0.9836 0.0164 0.0
NTC_0001_0001_23LGNLLT4_1 5,6,7,8 AATTGGCACA-CAGTCGGAGT 3344443 3277675 66768 0 0.0001 0.98 0.02 0.0
NTC_0001_0001_23LGNLLT4_2 1,2,3,4 GCACTACCAG-GAAGACTTAG 641054 621784 19270 0 0.0 0.9699 0.0301 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1 1,2,3,4 GCATAAGATC-GAGAACTGGA 393425419 381873027 11552392 0 0.0121 0.9706 0.0294 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10 1,2,3,4 AGCGTCTCAT-CCTAGGCGAT 328747144 304724089 24023055 0 0.0101 0.9269 0.0731 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11 1,2,3,4 CTCTATACTG-CGTTCAACCG 288526618 279128501 9398117 0 0.0089 0.9674 0.0326 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12 1,2,3,4 ATAGCCGGTT-TCTTATCCGG 230755606 224170365 6585241 0 0.0071 0.9715 0.0285 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13 1,2,3,4 GTTCTCATCA-CCTCCATTCT 241681765 235802826 5878939 0 0.0075 0.9757 0.0243 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14 1,2,3,4 CAATGCGTGT-ATGTTCGCGC 243357209 236799219 6557990 0 0.0075 0.9731 0.0269 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15 1,2,3,4 TGAGTGTACA-ATTCGCCGGT 246048606 238670055 7378551 0 0.0076 0.97 0.03 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16 1,2,3,4 TGCTTCCAAG-CAGATGTTAC 207071919 202129336 4942583 0 0.0064 0.9761 0.0239 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17 1,2,3,4 CCTACTCTGC-TGCAATTGGC 314632833 307749612 6883221 0 0.0097 0.9781 0.0219 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18 1,2,3,4 TCGCTGAGAG-AATGCTCTAG 269004679 260508275 8496404 0 0.0083 0.9684 0.0316 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19 1,2,3,4 CGCTAATTGC-CCATCGCATT 280507711 273633503 6874208 0 0.0086 0.9755 0.0245 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2 1,2,3,4 AAGGTGTACT-AGCGCTACAG 300416308 292349064 8067244 0 0.0093 0.9731 0.0269 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20 1,2,3,4 TCAGCTGTCA-ACAGCTCCTG 247016279 240679776 6336503 0 0.0076 0.9743 0.0257 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21 1,2,3,4 AGACGACAGA-GAGCTGGAAT 162231533 157329008 4902525 0 0.005 0.9698 0.0302 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22 1,2,3,4 TAGGTCCAGA-TGCTCATCCG 200398611 188922449 11476162 0 0.0062 0.9427 0.0573 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23 1,2,3,4 TAACCTGAAC-TCAATTGACG 229787172 224394579 5392593 0 0.0071 0.9765 0.0235 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24 1,2,3,4 GATAGGTGAA-AGACGCAAGA 264116852 255271281 8845571 0 0.0081 0.9665 0.0335 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3 1,2,3,4 CTTCTAACCG-TGATCAGTCT 264057411 257720631 6336780 0 0.0081 0.976 0.024 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4 1,2,3,4 TCGACCAGCA-GTTCGAACTC 241474996 235437655 6037341 0 0.0074 0.975 0.025 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5 1,2,3,4 GTGACACGTC-CTTACACTGA 238490532 232835822 5654710 0 0.0074 0.9763 0.0237 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6 1,2,3,4 AATGGACGCG-AAGTGCACCG 239147428 231985900 7161528 0 0.0074 0.9701 0.0299 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7 1,2,3,4 TCTCCGTACT-AGTTGTGATC 245205192 239215571 5989621 0 0.0076 0.9756 0.0244 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8 1,2,3,4 TGGAAGCACA-TCCAACACCG 192391662 187382374 5009288 0 0.0059 0.974 0.026 0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9 1,2,3,4 GATAGACAAC-GTGTTCACGT 438185507 427715244 10470263 0 0.0135 0.9761 0.0239 0.0
Undetermined 1,2,3,4,5,6,7,8 1444669210 1444669210 0 0 0.0445 1.0 0.0 0.0
tih_rna_sample_00017_23LGNLLT4_1 1,2,3,4 CCAGTATTCT-ACGAAGCGAT 341962004 333744704 8217300 0 0.0105 0.976 0.024 0.0
tih_rna_sample_00038_23LGNLLT4_1 1,2,3,4 ATCATACCGC-ATGTCGTACT 209863964 204634921 5229043 0 0.0065 0.9751 0.0249 0.0
tih_rna_sample_00067_23LGNLLT4_1 1,2,3,4 ATTCGCACTA-TCTGTATGGT 315679581 308561240 7118341 0 0.0097 0.9775 0.0225 0.0
tih_rna_sample_00142_23LGNLLT4_1 1,2,3,4 CTCTTCAGCA-TTGTCTCTAC 252820774 246345377 6475397 0 0.0078 0.9744 0.0256 0.0
tih_rna_sample_00143_23LGNLLT4_1 1,2,3,4 CTGTATGCCA-TTCCGGCTGT 238063418 232756962 5306456 0 0.0073 0.9777 0.0223 0.0
tih_rna_sample_00144_23LGNLLT4_1 1,2,3,4 ATCCAGCATG-AGAGCTCTAC 399324122 387839226 11484896 0 0.0123 0.9712 0.0288 0.0
tih_rna_sample_00270_23LGNLLT4_1 1,2,3,4 GCGCCATATA-GAACCTCCTA 276963229 269401591 7561638 0 0.0085 0.9727 0.0273 0.0
tih_rna_sample_00276_23LGNLLT4_1 1,2,3,4 CACTCGCATA-GAACGCGACA 250076727 243589238 6487489 0 0.0077 0.9741 0.0259 0.0
tih_rna_sample_00298_23LGNLLT4_1 5,6,7,8 TCGCATGACA-TTGGCCAATG 415068639 408095678 6972961 0 0.0128 0.9832 0.0168 0.0
tih_rna_sample_00303_23LGNLLT4_1 5,6,7,8 CGTACTTAGA-CCGATGTTCA 330716303 325275984 5440319 0 0.0102 0.9835 0.0165 0.0
tih_rna_sample_00307_23LGNLLT4_1 5,6,7,8 AACGCGACTG-GACCTACGAG 302324998 297232059 5092939 0 0.0093 0.9832 0.0168 0.0
tih_rna_sample_00308_23LGNLLT4_1 5,6,7,8 TCGTGACGAC-GTGACTAACT 271785982 267607582 4178400 0 0.0084 0.9846 0.0154 0.0
tih_rna_sample_00309_23LGNLLT4_1 5,6,7,8 TCAATCTAGC-TCCGAATAAG 427387301 420886083 6501218 0 0.0132 0.9848 0.0152 0.0
tih_rna_sample_00312_23LGNLLT4_1 5,6,7,8 AGTACAACTG-CATTGAGTTC 411321016 404785959 6535057 0 0.0127 0.9841 0.0159 0.0
tih_rna_sample_00317_23LGNLLT4_1 5,6,7,8 CATCAGGCGT-CGTGTTACCG 234203017 229650370 4552647 0 0.0072 0.9806 0.0194 0.0
tih_rna_sample_00319_23LGNLLT4_1 5,6,7,8 GCCTAGAGTC-ATGGTTCTCT 487925086 480590876 7334210 0 0.015 0.985 0.015 0.0
tih_rna_sample_00321_23LGNLLT4_1 5,6,7,8 CCGACAACCT-TTCTACCTGT 486849239 478219989 8629250 0 0.015 0.9823 0.0177 0.0
tih_rna_sample_00322_23LGNLLT4_1 5,6,7,8 ATAGGCAGTG-CAGAACTTAG 363348165 357920849 5427316 0 0.0112 0.9851 0.0149 0.0
tih_rna_sample_00323_23LGNLLT4_1 5,6,7,8 GAATAGAGTG-CACAGCGTCT 217151280 213512352 3638928 0 0.0067 0.9832 0.0168 0.0
tih_rna_sample_00331_23LGNLLT4_1 5,6,7,8 ATGGTTGTTG-AGTTATGAGG 338086029 332795329 5290700 0 0.0104 0.9844 0.0156 0.0
tih_rna_sample_00332_23LGNLLT4_1 5,6,7,8 CTACAAGTTC-GCACCATGAA 108094583 106229007 1865576 0 0.0033 0.9827 0.0173 0.0
tih_rna_sample_00341_23LGNLLT4_1 5,6,7,8 TTGGATTGTC-CGGCTGTTAG 290624285 285363643 5260642 0 0.009 0.9819 0.0181 0.0
tih_rna_sample_00344_23LGNLLT4_1 5,6,7,8 AGGCAATCGC-ATGAGTCTGT 212753508 209687012 3066496 0 0.0066 0.9856 0.0144 0.0
tih_rna_sample_00345_23LGNLLT4_1 5,6,7,8 TGCAACACTA-CGTTCTGGTA 381788717 375240983 6547734 0 0.0118 0.9828 0.0172 0.0
tih_rna_sample_00346_23LGNLLT4_1 1,2,3,4 AAGGTCAATG-GCATTATAGG 103307213 100783588 2523625 0 0.0032 0.9756 0.0244 0.0
tih_rna_sample_00347_23LGNLLT4_1 5,6,7,8 GAATCGCCTG-CATTGACGGC 440033535 431827191 8206344 0 0.0136 0.9814 0.0186 0.0
tih_rna_sample_00348_23LGNLLT4_1 5,6,7,8 TCAATACGTG-GCTGCTAATA 436740777 429140718 7600059 0 0.0135 0.9826 0.0174 0.0
tih_rna_sample_00354_23LGNLLT4_1 5,6,7,8 ATTCTCCACG-TCGATGATCG 193755971 190244010 3511961 0 0.006 0.9819 0.0181 0.0
tih_rna_sample_00355_23LGNLLT4_1 5,6,7,8 TTACGGACGC-ATTGGCCAGC 428016141 420558887 7457254 0 0.0132 0.9826 0.0174 0.0
tih_rna_sample_00357_23LGNLLT4_1 1,2,3,4 GTGACGCACA-CGTTGTTGCG 355189416 345591876 9597540 0 0.0109 0.973 0.027 0.0
tih_rna_sample_00358_23LGNLLT4_1 5,6,7,8 CCAATGTTGA-CTTGAATGTC 285167810 281151617 4016193 0 0.0088 0.9859 0.0141 0.0
tih_rna_sample_00360_23LGNLLT4_1 5,6,7,8 GCCGTGAACA-GCACCACCAT 217150290 213029517 4120773 0 0.0067 0.981 0.019 0.0
tih_rna_sample_00375_23LGNLLT4_1 1,2,3,4 TAAGGCTCAC-GACGTTACTT 273838688 266988076 6850612 0 0.0084 0.975 0.025 0.0
tih_rna_sample_00401_23LGNLLT4_1 1,2,3,4 ACCAGGAATT-AGCATGGCAT 199764878 193963033 5801845 0 0.0062 0.971 0.029 0.0
tih_rna_sample_00417_23LGNLLT4_1 1,2,3,4 CATATGGTGC-ACAGATCTCA 186439888 181887865 4552023 0 0.0057 0.9756 0.0244 0.0
tih_rna_sample_00423_23LGNLLT4_1 1,2,3,4 TGGCACTGAT-GCCATAGAAT 227744329 222161538 5582791 0 0.007 0.9755 0.0245 0.0
tih_rna_sample_00452_23LGNLLT4_1 5,6,7,8 TAAGATCGGA-TTCATCCGTG 540616729 532987667 7629062 0 0.0167 0.9859 0.0141 0.0
tih_rna_sample_00477_23LGNLLT4_1 5,6,7,8 TGTTACAGAG-TGTGTACCAG 508863707 494655189 14208518 0 0.0157 0.9721 0.0279 0.0
tih_rna_sample_00483_23LGNLLT4_1 5,6,7,8 GAAGCAAGCG-TCACCGACTA 302224918 296331592 5893326 0 0.0093 0.9805 0.0195 0.0
tih_rna_sample_00485_23LGNLLT4_1 5,6,7,8 TTCGCGGACT-AGAGAGTGGT 476202193 468342228 7859965 0 0.0147 0.9835 0.0165 0.0
tih_rna_sample_00487_23LGNLLT4_1 5,6,7,8 GCGGAGTCAA-CTCTATAGCT 153098965 150328270 2770695 0 0.0047 0.9819 0.0181 0.0
tih_rna_sample_00494_23LGNLLT4_1 5,6,7,8 GATGCTAGAA-TGGATGCCAG 227609085 224044245 3564840 0 0.007 0.9843 0.0157 0.0
tih_rna_sample_00499_23LGNLLT4_1 5,6,7,8 ACGATGGTTA-AATTGCTAGG 663306208 651757722 11548486 0 0.0204 0.9826 0.0174 0.0
tih_rna_sample_00500_23LGNLLT4_1 5,6,7,8 AGAGCAGTAT-CAAGAGGAGG 595520498 585593719 9926779 0 0.0184 0.9833 0.0167 0.0
tih_rna_sample_00501_23LGNLLT4_1 5,6,7,8 TTGTGATCCT-ATGAAGGCAT 548230560 540215689 8014871 0 0.0169 0.9854 0.0146 0.0
tih_rna_sample_00505_23LGNLLT4_1 5,6,7,8 TTAGTTGCTG-ATGGCGGATT 189506116 186612960 2893156 0 0.0058 0.9847 0.0153 0.0
tih_rna_sample_00508_23LGNLLT4_1 5,6,7,8 AGTCAGATGC-CTCACACACT 363716874 357097692 6619182 0 0.0112 0.9818 0.0182 0.0
tih_rna_sample_00509_23LGNLLT4_1 5,6,7,8 CTTAGTACGC-GCTACAACGA 526947117 517731885 9215232 0 0.0162 0.9825 0.0175 0.0
tih_rna_sample_00510_23LGNLLT4_1 5,6,7,8 GTACGCATCG-GAGTTGTTCA 176018172 172555792 3462380 0 0.0054 0.9803 0.0197 0.0
tih_rna_sample_00512_23LGNLLT4_1 5,6,7,8 ACTTCCGTTC-CAATTCCGTG 465215480 458045838 7169642 0 0.0143 0.9846 0.0154 0.0
tih_rna_sample_00528_23LGNLLT4_1 5,6,7,8 TGGTGGTTGT-TACCTGTCAA 285862369 281577389 4284980 0 0.0088 0.985 0.015 0.0
tih_rna_sample_00531_23LGNLLT4_1 5,6,7,8 ACGCAACACA-CATTCAGGAG 30289170 29694984 594186 0 0.0009 0.9804 0.0196 0.0
tih_rna_sample_00535_23LGNLLT4_1 5,6,7,8 CCAGTGCACT-CCTCCGTATC 81745807 79658833 2086974 0 0.0025 0.9745 0.0255 0.0
tih_rna_sample_00536_23LGNLLT4_1 5,6,7,8 ATCCTAGAAC-TGAAGTCTGC 25247459 24817303 430156 0 0.0008 0.983 0.017 0.0
tih_rna_sample_00543_23LGNLLT4_1 5,6,7,8 CTTACTCTCT-CTGCTTAAGG 140967059 138112583 2854476 0 0.0043 0.9798 0.0202 0.0
tih_rna_sample_00548_23LGNLLT4_1 5,6,7,8 ACAATAGCAC-GTATGCCTAT 189521340 186410841 3110499 0 0.0058 0.9836 0.0164 0.0
tih_rna_sample_00549_23LGNLLT4_1 5,6,7,8 AACCTGATCT-ATTCCGTCCG 375222888 368102339 7120549 0 0.0116 0.981 0.019 0.0
tih_rna_sample_00566_23LGNLLT4_1 5,6,7,8 AGGAGACCAC-TACCACGTAG 490074107 482089700 7984407 0 0.0151 0.9837 0.0163 0.0
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