SampleID,Lanes,Index,# Reads,# Perfect Index Reads,# One Mismatch Index Reads,# Two Mismatch Index Reads,% Reads,% Perfect Index Reads,% One Mismatch Index Reads,% Two Mismatch Index Reads
FFPE_HD789_01_RNA_0002_23LGNLLT4_1,"1,2,3,4",GAGTAGTGAC-GCGATGCCAA,522934407,509602070,13332337,0,0.0161,0.9745,0.0255,0.0
FFPE_HD789_01_RNA_0002_23LGNLLT4_2,"1,2,3,4",AGAAGATTGG-AGAAGGTACT,480325155,467488053,12837102,0,0.0148,0.9733,0.0267,0.0
FFPE_HD789_01_RNA_0002_23LGNLLT4_3,"1,2,3,4",CCATCACGTG-TCTCCTGGTT,535136407,517726078,17410329,0,0.0165,0.9675,0.0325,0.0
FFPE_HD789_02_RNA_0011_23LGNLLT4_1,"5,6,7,8",CCACCTGCTT-TGTTACCGTC,586052933,574524783,11528150,0,0.0181,0.9803,0.0197,0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_1,"1,2,3,4",TAGCGAGGCT-TTGCTCACGG,857738448,838452497,19285951,0,0.0264,0.9775,0.0225,0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_2,"1,2,3,4",TCTGACTATG-TAACCAGATC,607531705,594292752,13238953,0,0.0187,0.9782,0.0218,0.0
FFPE_HD834_01_RNA_0001_23LGNLLT4_3,"1,2,3,4",TGTCAGGCTT-GATTCCTTAC,598802268,584998646,13803622,0,0.0185,0.9769,0.0231,0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_1,"1,2,3,4",CCAACTGTAT-GCGCTAGAGA,671120297,651016307,20103990,0,0.0207,0.97,0.03,0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_2,"1,2,3,4",TGTGACGTAT-GCAGCGTTAG,557991895,544790311,13201584,0,0.0172,0.9763,0.0237,0.0
FFPE_HD835_01_RNA_0001_23LGNLLT4_3,"1,2,3,4",CACGTGATGG-TACAACGTGT,521948983,508094067,13854916,0,0.0161,0.9735,0.0265,0.0
FFPE_V4_0001_RNA_0001_23LGNLLT4_1,"5,6,7,8",GATCTGTATG-ATCGAAGAGC,477896367,470082524,7813843,0,0.0147,0.9836,0.0164,0.0
NTC_0001_0001_23LGNLLT4_1,"5,6,7,8",AATTGGCACA-CAGTCGGAGT,3344443,3277675,66768,0,0.0001,0.98,0.02,0.0
NTC_0001_0001_23LGNLLT4_2,"1,2,3,4",GCACTACCAG-GAAGACTTAG,641054,621784,19270,0,0.0,0.9699,0.0301,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_1,"1,2,3,4",GCATAAGATC-GAGAACTGGA,393425419,381873027,11552392,0,0.0121,0.9706,0.0294,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10,"1,2,3,4",AGCGTCTCAT-CCTAGGCGAT,328747144,304724089,24023055,0,0.0101,0.9269,0.0731,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_11,"1,2,3,4",CTCTATACTG-CGTTCAACCG,288526618,279128501,9398117,0,0.0089,0.9674,0.0326,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_12,"1,2,3,4",ATAGCCGGTT-TCTTATCCGG,230755606,224170365,6585241,0,0.0071,0.9715,0.0285,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_13,"1,2,3,4",GTTCTCATCA-CCTCCATTCT,241681765,235802826,5878939,0,0.0075,0.9757,0.0243,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_14,"1,2,3,4",CAATGCGTGT-ATGTTCGCGC,243357209,236799219,6557990,0,0.0075,0.9731,0.0269,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_15,"1,2,3,4",TGAGTGTACA-ATTCGCCGGT,246048606,238670055,7378551,0,0.0076,0.97,0.03,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_16,"1,2,3,4",TGCTTCCAAG-CAGATGTTAC,207071919,202129336,4942583,0,0.0064,0.9761,0.0239,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_17,"1,2,3,4",CCTACTCTGC-TGCAATTGGC,314632833,307749612,6883221,0,0.0097,0.9781,0.0219,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_18,"1,2,3,4",TCGCTGAGAG-AATGCTCTAG,269004679,260508275,8496404,0,0.0083,0.9684,0.0316,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_19,"1,2,3,4",CGCTAATTGC-CCATCGCATT,280507711,273633503,6874208,0,0.0086,0.9755,0.0245,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_2,"1,2,3,4",AAGGTGTACT-AGCGCTACAG,300416308,292349064,8067244,0,0.0093,0.9731,0.0269,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_20,"1,2,3,4",TCAGCTGTCA-ACAGCTCCTG,247016279,240679776,6336503,0,0.0076,0.9743,0.0257,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_21,"1,2,3,4",AGACGACAGA-GAGCTGGAAT,162231533,157329008,4902525,0,0.005,0.9698,0.0302,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_22,"1,2,3,4",TAGGTCCAGA-TGCTCATCCG,200398611,188922449,11476162,0,0.0062,0.9427,0.0573,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_23,"1,2,3,4",TAACCTGAAC-TCAATTGACG,229787172,224394579,5392593,0,0.0071,0.9765,0.0235,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_24,"1,2,3,4",GATAGGTGAA-AGACGCAAGA,264116852,255271281,8845571,0,0.0081,0.9665,0.0335,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_3,"1,2,3,4",CTTCTAACCG-TGATCAGTCT,264057411,257720631,6336780,0,0.0081,0.976,0.024,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_4,"1,2,3,4",TCGACCAGCA-GTTCGAACTC,241474996,235437655,6037341,0,0.0074,0.975,0.025,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_5,"1,2,3,4",GTGACACGTC-CTTACACTGA,238490532,232835822,5654710,0,0.0074,0.9763,0.0237,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_6,"1,2,3,4",AATGGACGCG-AAGTGCACCG,239147428,231985900,7161528,0,0.0074,0.9701,0.0299,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_7,"1,2,3,4",TCTCCGTACT-AGTTGTGATC,245205192,239215571,5989621,0,0.0076,0.9756,0.0244,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_8,"1,2,3,4",TGGAAGCACA-TCCAACACCG,192391662,187382374,5009288,0,0.0059,0.974,0.026,0.0
SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_9,"1,2,3,4",GATAGACAAC-GTGTTCACGT,438185507,427715244,10470263,0,0.0135,0.9761,0.0239,0.0
Undetermined,"1,2,3,4,5,6,7,8",,1444669210,1444669210,0,0,0.0445,1.0,0.0,0.0
tih_rna_sample_00017_23LGNLLT4_1,"1,2,3,4",CCAGTATTCT-ACGAAGCGAT,341962004,333744704,8217300,0,0.0105,0.976,0.024,0.0
tih_rna_sample_00038_23LGNLLT4_1,"1,2,3,4",ATCATACCGC-ATGTCGTACT,209863964,204634921,5229043,0,0.0065,0.9751,0.0249,0.0
tih_rna_sample_00067_23LGNLLT4_1,"1,2,3,4",ATTCGCACTA-TCTGTATGGT,315679581,308561240,7118341,0,0.0097,0.9775,0.0225,0.0
tih_rna_sample_00142_23LGNLLT4_1,"1,2,3,4",CTCTTCAGCA-TTGTCTCTAC,252820774,246345377,6475397,0,0.0078,0.9744,0.0256,0.0
tih_rna_sample_00143_23LGNLLT4_1,"1,2,3,4",CTGTATGCCA-TTCCGGCTGT,238063418,232756962,5306456,0,0.0073,0.9777,0.0223,0.0
tih_rna_sample_00144_23LGNLLT4_1,"1,2,3,4",ATCCAGCATG-AGAGCTCTAC,399324122,387839226,11484896,0,0.0123,0.9712,0.0288,0.0
tih_rna_sample_00270_23LGNLLT4_1,"1,2,3,4",GCGCCATATA-GAACCTCCTA,276963229,269401591,7561638,0,0.0085,0.9727,0.0273,0.0
tih_rna_sample_00276_23LGNLLT4_1,"1,2,3,4",CACTCGCATA-GAACGCGACA,250076727,243589238,6487489,0,0.0077,0.9741,0.0259,0.0
tih_rna_sample_00298_23LGNLLT4_1,"5,6,7,8",TCGCATGACA-TTGGCCAATG,415068639,408095678,6972961,0,0.0128,0.9832,0.0168,0.0
tih_rna_sample_00303_23LGNLLT4_1,"5,6,7,8",CGTACTTAGA-CCGATGTTCA,330716303,325275984,5440319,0,0.0102,0.9835,0.0165,0.0
tih_rna_sample_00307_23LGNLLT4_1,"5,6,7,8",AACGCGACTG-GACCTACGAG,302324998,297232059,5092939,0,0.0093,0.9832,0.0168,0.0
tih_rna_sample_00308_23LGNLLT4_1,"5,6,7,8",TCGTGACGAC-GTGACTAACT,271785982,267607582,4178400,0,0.0084,0.9846,0.0154,0.0
tih_rna_sample_00309_23LGNLLT4_1,"5,6,7,8",TCAATCTAGC-TCCGAATAAG,427387301,420886083,6501218,0,0.0132,0.9848,0.0152,0.0
tih_rna_sample_00312_23LGNLLT4_1,"5,6,7,8",AGTACAACTG-CATTGAGTTC,411321016,404785959,6535057,0,0.0127,0.9841,0.0159,0.0
tih_rna_sample_00317_23LGNLLT4_1,"5,6,7,8",CATCAGGCGT-CGTGTTACCG,234203017,229650370,4552647,0,0.0072,0.9806,0.0194,0.0
tih_rna_sample_00319_23LGNLLT4_1,"5,6,7,8",GCCTAGAGTC-ATGGTTCTCT,487925086,480590876,7334210,0,0.015,0.985,0.015,0.0
tih_rna_sample_00321_23LGNLLT4_1,"5,6,7,8",CCGACAACCT-TTCTACCTGT,486849239,478219989,8629250,0,0.015,0.9823,0.0177,0.0
tih_rna_sample_00322_23LGNLLT4_1,"5,6,7,8",ATAGGCAGTG-CAGAACTTAG,363348165,357920849,5427316,0,0.0112,0.9851,0.0149,0.0
tih_rna_sample_00323_23LGNLLT4_1,"5,6,7,8",GAATAGAGTG-CACAGCGTCT,217151280,213512352,3638928,0,0.0067,0.9832,0.0168,0.0
tih_rna_sample_00331_23LGNLLT4_1,"5,6,7,8",ATGGTTGTTG-AGTTATGAGG,338086029,332795329,5290700,0,0.0104,0.9844,0.0156,0.0
tih_rna_sample_00332_23LGNLLT4_1,"5,6,7,8",CTACAAGTTC-GCACCATGAA,108094583,106229007,1865576,0,0.0033,0.9827,0.0173,0.0
tih_rna_sample_00341_23LGNLLT4_1,"5,6,7,8",TTGGATTGTC-CGGCTGTTAG,290624285,285363643,5260642,0,0.009,0.9819,0.0181,0.0
tih_rna_sample_00344_23LGNLLT4_1,"5,6,7,8",AGGCAATCGC-ATGAGTCTGT,212753508,209687012,3066496,0,0.0066,0.9856,0.0144,0.0
tih_rna_sample_00345_23LGNLLT4_1,"5,6,7,8",TGCAACACTA-CGTTCTGGTA,381788717,375240983,6547734,0,0.0118,0.9828,0.0172,0.0
tih_rna_sample_00346_23LGNLLT4_1,"1,2,3,4",AAGGTCAATG-GCATTATAGG,103307213,100783588,2523625,0,0.0032,0.9756,0.0244,0.0
tih_rna_sample_00347_23LGNLLT4_1,"5,6,7,8",GAATCGCCTG-CATTGACGGC,440033535,431827191,8206344,0,0.0136,0.9814,0.0186,0.0
tih_rna_sample_00348_23LGNLLT4_1,"5,6,7,8",TCAATACGTG-GCTGCTAATA,436740777,429140718,7600059,0,0.0135,0.9826,0.0174,0.0
tih_rna_sample_00354_23LGNLLT4_1,"5,6,7,8",ATTCTCCACG-TCGATGATCG,193755971,190244010,3511961,0,0.006,0.9819,0.0181,0.0
tih_rna_sample_00355_23LGNLLT4_1,"5,6,7,8",TTACGGACGC-ATTGGCCAGC,428016141,420558887,7457254,0,0.0132,0.9826,0.0174,0.0
tih_rna_sample_00357_23LGNLLT4_1,"1,2,3,4",GTGACGCACA-CGTTGTTGCG,355189416,345591876,9597540,0,0.0109,0.973,0.027,0.0
tih_rna_sample_00358_23LGNLLT4_1,"5,6,7,8",CCAATGTTGA-CTTGAATGTC,285167810,281151617,4016193,0,0.0088,0.9859,0.0141,0.0
tih_rna_sample_00360_23LGNLLT4_1,"5,6,7,8",GCCGTGAACA-GCACCACCAT,217150290,213029517,4120773,0,0.0067,0.981,0.019,0.0
tih_rna_sample_00375_23LGNLLT4_1,"1,2,3,4",TAAGGCTCAC-GACGTTACTT,273838688,266988076,6850612,0,0.0084,0.975,0.025,0.0
tih_rna_sample_00401_23LGNLLT4_1,"1,2,3,4",ACCAGGAATT-AGCATGGCAT,199764878,193963033,5801845,0,0.0062,0.971,0.029,0.0
tih_rna_sample_00417_23LGNLLT4_1,"1,2,3,4",CATATGGTGC-ACAGATCTCA,186439888,181887865,4552023,0,0.0057,0.9756,0.0244,0.0
tih_rna_sample_00423_23LGNLLT4_1,"1,2,3,4",TGGCACTGAT-GCCATAGAAT,227744329,222161538,5582791,0,0.007,0.9755,0.0245,0.0
tih_rna_sample_00452_23LGNLLT4_1,"5,6,7,8",TAAGATCGGA-TTCATCCGTG,540616729,532987667,7629062,0,0.0167,0.9859,0.0141,0.0
tih_rna_sample_00477_23LGNLLT4_1,"5,6,7,8",TGTTACAGAG-TGTGTACCAG,508863707,494655189,14208518,0,0.0157,0.9721,0.0279,0.0
tih_rna_sample_00483_23LGNLLT4_1,"5,6,7,8",GAAGCAAGCG-TCACCGACTA,302224918,296331592,5893326,0,0.0093,0.9805,0.0195,0.0
tih_rna_sample_00485_23LGNLLT4_1,"5,6,7,8",TTCGCGGACT-AGAGAGTGGT,476202193,468342228,7859965,0,0.0147,0.9835,0.0165,0.0
tih_rna_sample_00487_23LGNLLT4_1,"5,6,7,8",GCGGAGTCAA-CTCTATAGCT,153098965,150328270,2770695,0,0.0047,0.9819,0.0181,0.0
tih_rna_sample_00494_23LGNLLT4_1,"5,6,7,8",GATGCTAGAA-TGGATGCCAG,227609085,224044245,3564840,0,0.007,0.9843,0.0157,0.0
tih_rna_sample_00499_23LGNLLT4_1,"5,6,7,8",ACGATGGTTA-AATTGCTAGG,663306208,651757722,11548486,0,0.0204,0.9826,0.0174,0.0
tih_rna_sample_00500_23LGNLLT4_1,"5,6,7,8",AGAGCAGTAT-CAAGAGGAGG,595520498,585593719,9926779,0,0.0184,0.9833,0.0167,0.0
tih_rna_sample_00501_23LGNLLT4_1,"5,6,7,8",TTGTGATCCT-ATGAAGGCAT,548230560,540215689,8014871,0,0.0169,0.9854,0.0146,0.0
tih_rna_sample_00505_23LGNLLT4_1,"5,6,7,8",TTAGTTGCTG-ATGGCGGATT,189506116,186612960,2893156,0,0.0058,0.9847,0.0153,0.0
tih_rna_sample_00508_23LGNLLT4_1,"5,6,7,8",AGTCAGATGC-CTCACACACT,363716874,357097692,6619182,0,0.0112,0.9818,0.0182,0.0
tih_rna_sample_00509_23LGNLLT4_1,"5,6,7,8",CTTAGTACGC-GCTACAACGA,526947117,517731885,9215232,0,0.0162,0.9825,0.0175,0.0
tih_rna_sample_00510_23LGNLLT4_1,"5,6,7,8",GTACGCATCG-GAGTTGTTCA,176018172,172555792,3462380,0,0.0054,0.9803,0.0197,0.0
tih_rna_sample_00512_23LGNLLT4_1,"5,6,7,8",ACTTCCGTTC-CAATTCCGTG,465215480,458045838,7169642,0,0.0143,0.9846,0.0154,0.0
tih_rna_sample_00528_23LGNLLT4_1,"5,6,7,8",TGGTGGTTGT-TACCTGTCAA,285862369,281577389,4284980,0,0.0088,0.985,0.015,0.0
tih_rna_sample_00531_23LGNLLT4_1,"5,6,7,8",ACGCAACACA-CATTCAGGAG,30289170,29694984,594186,0,0.0009,0.9804,0.0196,0.0
tih_rna_sample_00535_23LGNLLT4_1,"5,6,7,8",CCAGTGCACT-CCTCCGTATC,81745807,79658833,2086974,0,0.0025,0.9745,0.0255,0.0
tih_rna_sample_00536_23LGNLLT4_1,"5,6,7,8",ATCCTAGAAC-TGAAGTCTGC,25247459,24817303,430156,0,0.0008,0.983,0.017,0.0
tih_rna_sample_00543_23LGNLLT4_1,"5,6,7,8",CTTACTCTCT-CTGCTTAAGG,140967059,138112583,2854476,0,0.0043,0.9798,0.0202,0.0
tih_rna_sample_00548_23LGNLLT4_1,"5,6,7,8",ACAATAGCAC-GTATGCCTAT,189521340,186410841,3110499,0,0.0058,0.9836,0.0164,0.0
tih_rna_sample_00549_23LGNLLT4_1,"5,6,7,8",AACCTGATCT-ATTCCGTCCG,375222888,368102339,7120549,0,0.0116,0.981,0.019,0.0
tih_rna_sample_00566_23LGNLLT4_1,"5,6,7,8",AGGAGACCAC-TACCACGTAG,490074107,482089700,7984407,0,0.0151,0.9837,0.0163,0.0