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BCL CONVERT QC REPORT - DETAILED
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1. % UNDETERMINED PER LANE
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%_Undetermined Undetermined_Reads Total_Reads
Lane
1 5.22 211346066 4046804284
2 5.33 213604774 4005741146
3 5.18 210105409 4055602240
4 4.90 196957742 4015754163
5 3.56 144447804 4059237853
6 3.75 152658631 4075260777
7 3.85 158180325 4111566941
8 3.87 157368459 4070182884
2. SAMPLES WITH LOW READS (NON-NTC)
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No samples found with low reads
3. NTC SAMPLES WITH HIGH READS
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Found 1 NTC samples with high reads:
SampleID Index # Reads
0 NTC_0001_0001_23LGNLLT4_1 AATTGGCACA-CAGTCGGAGT 3344443
4. TOP UNKNOWN BARCODES
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Found 81 significant unknown barcodes:
Lane index index2 # Reads % of Unknown Barcodes % of All Reads Percentage_of_Lane Percentage_of_Total
0 1 CCAACTGTAT GGGGGGGGGG 16512354 0.078129 0.004080 0.408034 0.050901
1 1 GTGACGCACA GGGGGGGGGG 6109919 0.028910 0.001510 0.150981 0.018834
2 1 GAGTAGTGAC GGGGGGGGGG 5095319 0.024109 0.001259 0.125910 0.015707
3 1 GATAGGTGAA GGGGGGGGGG 4626452 0.021890 0.001143 0.114324 0.014261
4 1 AGACGACAGA GGGGGGGGGG 4425791 0.020941 0.001094 0.109365 0.013643
5 1 TGAGTGTACA GGGGGGGGGG 3787896 0.017923 0.000936 0.093602 0.011677
6 1 TAGCGAGGCT GGGGGGGGGG 3727400 0.017636 0.000921 0.092107 0.011490
7 1 AAGGTGTACT GGGGGGGGGG 3677456 0.017400 0.000909 0.090873 0.011336
8 1 CTCTATACTG GGGGGGGGGG 3616335 0.017111 0.000894 0.089363 0.011148
9 1 TGTGACGTAT GGGGGGGGGG 3000754 0.014198 0.000742 0.074151 0.009250
10 1 ACCAGGAATT GGGGGGGGGG 2549661 0.012064 0.000630 0.063004 0.007860
11 1 TAAGGCTCAC GGGGGGGGGG 2174868 0.010291 0.000537 0.053743 0.006704
12 1 ATCATACCGC GGGGGGGGGG 2147851 0.010163 0.000531 0.053075 0.006621
13 1 TCTCCGTACT GGGGGGGGGG 2053900 0.009718 0.000508 0.050754 0.006331
14 2 CCAACTGTAT GGGGGGGGGG 15161678 0.070980 0.003785 0.378499 0.046737
15 2 GTGACGCACA GGGGGGGGGG 5669869 0.026544 0.001415 0.141544 0.017478
16 2 GAGTAGTGAC GGGGGGGGGG 5064184 0.023708 0.001264 0.126423 0.015611
17 2 GATAGGTGAA GGGGGGGGGG 4188170 0.019607 0.001046 0.104554 0.012910
18 2 AGACGACAGA GGGGGGGGGG 4035783 0.018894 0.001007 0.100750 0.012441
19 2 TAGCGAGGCT GGGGGGGGGG 3606840 0.016886 0.000900 0.090042 0.011118
20 2 TGAGTGTACA GGGGGGGGGG 3514278 0.016452 0.000877 0.087731 0.010833
21 2 AAGGTGTACT GGGGGGGGGG 3471119 0.016250 0.000867 0.086654 0.010700
22 2 CTCTATACTG GGGGGGGGGG 3427535 0.016046 0.000856 0.085566 0.010566
23 2 ATCCAGCATG AGATCTCGGT 3346817 0.015668 0.000836 0.083551 0.010317
24 2 TGTGACGTAT GGGGGGGGGG 2561274 0.011991 0.000639 0.063940 0.007895
25 2 ACCAGGAATT GGGGGGGGGG 2473783 0.011581 0.000618 0.061756 0.007626
26 2 ATCATACCGC GGGGGGGGGG 2088118 0.009776 0.000521 0.052128 0.006437
27 2 TAAGGCTCAC GGGGGGGGGG 2028720 0.009498 0.000506 0.050645 0.006254
28 3 CCAACTGTAT GGGGGGGGGG 15100371 0.071870 0.003723 0.372334 0.046548
29 3 GTGACGCACA GGGGGGGGGG 5596458 0.026636 0.001380 0.137993 0.017252
30 3 GAGTAGTGAC GGGGGGGGGG 4917015 0.023403 0.001212 0.121240 0.015157
31 3 GATAGGTGAA GGGGGGGGGG 4171417 0.019854 0.001029 0.102856 0.012859
32 3 AGACGACAGA GGGGGGGGGG 3959603 0.018846 0.000976 0.097633 0.012206
33 3 TGAGTGTACA GGGGGGGGGG 3470378 0.016517 0.000856 0.085570 0.010698
34 3 TAGCGAGGCT GGGGGGGGGG 3457160 0.016454 0.000852 0.085244 0.010657
35 3 AAGGTGTACT GGGGGGGGGG 3367739 0.016029 0.000830 0.083039 0.010381
36 3 CTCTATACTG GGGGGGGGGG 3290240 0.015660 0.000811 0.081128 0.010142
37 3 ATCCAGCATG AGATCTCGGT 3113478 0.014819 0.000768 0.076770 0.009598
38 3 TGTGACGTAT GGGGGGGGGG 2514623 0.011968 0.000620 0.062004 0.007752
39 3 ACCAGGAATT GGGGGGGGGG 2425246 0.011543 0.000598 0.059800 0.007476
40 4 CCAACTGTAT GGGGGGGGGG 14837857 0.075335 0.003695 0.369491 0.045739
41 4 GTGACGCACA GGGGGGGGGG 5492973 0.027889 0.001368 0.136786 0.016933
42 4 GAGTAGTGAC GGGGGGGGGG 4397564 0.022327 0.001095 0.109508 0.013556
43 4 GATAGGTGAA GGGGGGGGGG 4211227 0.021381 0.001049 0.104868 0.012982
44 4 AGACGACAGA GGGGGGGGGG 3868534 0.019641 0.000963 0.096334 0.011925
45 4 TGAGTGTACA GGGGGGGGGG 3474004 0.017638 0.000865 0.086509 0.010709
46 4 TAGCGAGGCT GGGGGGGGGG 3315912 0.016836 0.000826 0.082573 0.010222
47 4 AAGGTGTACT GGGGGGGGGG 3173047 0.016110 0.000790 0.079015 0.009781
48 4 CTCTATACTG GGGGGGGGGG 3114019 0.015811 0.000775 0.077545 0.009599
49 4 TGTGACGTAT GGGGGGGGGG 2835605 0.014397 0.000706 0.070612 0.008741
50 4 ACCAGGAATT GGGGGGGGGG 2230348 0.011324 0.000555 0.055540 0.006875
51 4 TAAGGCTCAC GGGGGGGGGG 2041112 0.010363 0.000508 0.050828 0.006292
52 5 TTGGATTGTC GGGGGGGGGG 6386285 0.044212 0.001573 0.157327 0.019686
53 5 TGCAACACTA GGGGGGGGGG 3653641 0.025294 0.000900 0.090008 0.011263
54 5 TCGCATGACA GGGGGGGGGG 3506075 0.024272 0.000864 0.086373 0.010808
55 5 CATCAGGCGT GGGGGGGGGG 3140590 0.021742 0.000774 0.077369 0.009681
56 5 CCACCTGCTT GGGGGGGGGG 3040546 0.021049 0.000749 0.074904 0.009373
57 5 CCAGTGCACT GGGGGGGGGG 2445200 0.016928 0.000602 0.060238 0.007538
58 6 TTGGATTGTC GGGGGGGGGG 6897136 0.045180 0.001692 0.169244 0.021261
59 6 TGCAACACTA GGGGGGGGGG 3977480 0.026055 0.000976 0.097601 0.012261
60 6 TCGCATGACA GGGGGGGGGG 3856686 0.025263 0.000946 0.094637 0.011889
61 6 CATCAGGCGT GGGGGGGGGG 3410098 0.022338 0.000837 0.083678 0.010512
62 6 CCACCTGCTT GGGGGGGGGG 3267007 0.021401 0.000802 0.080167 0.010071
63 6 CCAGTGCACT GGGGGGGGGG 2652819 0.017377 0.000651 0.065096 0.008178
64 7 TTGGATTGTC GGGGGGGGGG 7196004 0.045492 0.001750 0.175019 0.022182
65 7 TGCAACACTA GGGGGGGGGG 4140080 0.026173 0.001007 0.100693 0.012762
66 7 TCGCATGACA GGGGGGGGGG 4133143 0.026129 0.001005 0.100525 0.012741
67 7 CATCAGGCGT GGGGGGGGGG 3609071 0.022816 0.000878 0.087778 0.011125
68 7 CCACCTGCTT GGGGGGGGGG 3599203 0.022754 0.000875 0.087538 0.011095
69 7 CCAGTGCACT GGGGGGGGGG 2744600 0.017351 0.000668 0.066753 0.008461
70 7 GAAGCAAGCG GGGGGGGGGG 2170074 0.013719 0.000528 0.052780 0.006689
71 7 ACAATAGCAC GGGGGGGGGG 2116078 0.013378 0.000515 0.051466 0.006523
72 8 TTGGATTGTC GGGGGGGGGG 7535038 0.047882 0.001851 0.185128 0.023228
73 8 TGCAACACTA GGGGGGGGGG 4232194 0.026894 0.001040 0.103980 0.013046
74 8 TCGCATGACA GGGGGGGGGG 4042491 0.025688 0.000993 0.099320 0.012461
75 8 CATCAGGCGT GGGGGGGGGG 3662512 0.023273 0.000900 0.089984 0.011290
76 8 CCACCTGCTT GGGGGGGGGG 3431616 0.021806 0.000843 0.084311 0.010578
77 8 CCAGTGCACT GGGGGGGGGG 2926417 0.018596 0.000719 0.071899 0.009021
78 8 GAAGCAAGCG GGGGGGGGGG 2275317 0.014459 0.000559 0.055902 0.007014
79 8 ACAATAGCAC GGGGGGGGGG 2140678 0.013603 0.000526 0.052594 0.006599
80 8 CGTACTTAGA GGGGGGGGGG 2057009 0.013071 0.000505 0.050538 0.006341
5. BARCODES WITH HIGH MISMATCH RATES
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No barcodes found with high mismatch rates
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FINAL STATUS CHECK
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Overall % Undetermined: 4.45%
Status: FAIL
Reason(s):
NTC sample NTC_0001_0001_23LGNLLT4_1 has 3,344,443 reads > 2,000,000