.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b94f74e84c0ee1257bd030faab3798/.command.sh
Size: 298 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz)
Attempt

Content

#!/bin/bash -euo pipefail
kallisto \
    index \
    -t 2 \
     \
    -i kallisto \
    Homo_sapiens.GRCh38.102.cdna.all.fa.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX":
    kallisto: $(echo $(kallisto 2>&1) | sed 's/^kallisto //; s/Usage.*$//')
END_VERSIONS