#==================================================
#All numbers are READ count
#==================================================

Total records:                          646906908

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        59952427
Unmapped reads:                         4083838
mapq < mapq_cut (non-unique):           21764659

mapq >= mapq_cut (unique):              561105984
Read-1:                                 280688649
Read-2:                                 280417335
Reads map to '+':                       280568134
Reads map to '-':                       280537850
Non-splice reads:                       305057005
Splice reads:                           256048979
Reads mapped in proper pairs:           559193638
Proper-paired reads map to different chrom:0