#================================================== #All numbers are READ count #================================================== Total records: 655292656 QC failed: 0 Optical/PCR duplicate: 0 Non primary hits 58615916 Unmapped reads: 3875527 mapq < mapq_cut (non-unique): 23559963 mapq >= mapq_cut (unique): 569241250 Read-1: 284790948 Read-2: 284450302 Reads map to '+': 284632287 Reads map to '-': 284608963 Non-splice reads: 295417465 Splice reads: 273823785 Reads mapped in proper pairs: 567308954 Proper-paired reads map to different chrom:0