#==================================================
#All numbers are READ count
#==================================================

Total records:                          646692276

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        49819156
Unmapped reads:                         3731454
mapq < mapq_cut (non-unique):           17532151

mapq >= mapq_cut (unique):              575609515
Read-1:                                 287979343
Read-2:                                 287630172
Reads map to '+':                       287853138
Reads map to '-':                       287756377
Non-splice reads:                       325231476
Splice reads:                           250378039
Reads mapped in proper pairs:           573381868
Proper-paired reads map to different chrom:0